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informatics-isi-edu / synspy

Synaptic segmentation and visualization with fluorescence microscopy
BSD 3-Clause "New" or "Revised" License
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Mac version of 2d slicer has issues with clicking and with displaying the result of key presses #28

Closed BDemps closed 7 years ago

BDemps commented 7 years ago

Two potentially interconnected issues have arisen in the mac version of the program: (1) Usually, when you click a key (e.g., "F" to change the "feature" threshold), the changes that occur in the number associated with that threshold are displayed in the upper left corner of the image briefly. Although the threshold is indeed updated (you can see an increase or decrease in the number of clickable segments, depending on whether F is capitalized or not), the screen does not display the threshold value in the upper left corner. (2) When you click to update a segment to a false or true positive, the click actually occurs very far away from where the mouse pointer is located. See attached image to get a general idea of how far away the click is located. The red arrow refers to approximately where the mouse pointer is located, and the "flashlight" circle indicates where the click is actually registered on the image.

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karlcz commented 7 years ago

This seems to be a portability issue related to the high-dpi "retina" display feature on Macs. A fix is in progress...

mikedarcy commented 7 years ago

Fix added to release: https://github.com/informatics-isi-edu/synspy/releases/tag/v20170713.7

BDemps commented 7 years ago

Great, this works perfectly. Thank you for the fix!!

The only thing that seems to be missing now is that when I hover over something that should be clickable, I no longer see a change in color to indicate that I'm hovering over something clickable. It makes it a lot easier to know whether what you are clicking is a possible segment or not.

On Wed, Jul 26, 2017 at 12:59 PM, mikedarcy notifications@github.com wrote:

Fix added to release: https://github.com/informatics-isi-edu/synspy/ releases/tag/v20170713.7 https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_informatics-2Disi-2Dedu_synspy_releases_tag_v20170713.7&d=DwMCaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=Lssj6JKak_DaRnExGYcKnQ&m=675umhW38F5Om6s5OWBFKGEXAovYI1SABXvV6J8qcO8&s=ayGp0esOo9f76WtnPdRxbS4QlYbIzAIefytw3smY9kI&e=

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mikedarcy commented 7 years ago

Is this only on Mac? Or do you see it on Windows as well?

BDemps commented 7 years ago

I gotta get someone to try it on windows. I'll get back to you as soon as I can. Hopefully within 15

On Thu, Jul 27, 2017 at 1:13 PM, mikedarcy notifications@github.com wrote:

Is this only on Mac? Or do you see it on Windows as well?

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-- William Dempsey, Ph.D. Postdoctoral Scholar Molecular and Computational Biology Dana and David Dornsife College of Letters, Arts and Sciences University of Southern California wdempsey@usc.edu Lab #: 213-821-1818

BDemps commented 7 years ago

Okay it is definitely also an issue on Windows.

Another bug I found on windows (that maybe I mentioned before) is that the nuclei view thresholding seems odd - seems like they make synapse like segments instead of nuclei like segments. I'm not sure what is happening :(

On Jul 27, 2017 1:21 PM, "William Dempsey" wdempsey@usc.edu wrote:

I gotta get someone to try it on windows. I'll get back to you as soon as I can. Hopefully within 15

On Thu, Jul 27, 2017 at 1:13 PM, mikedarcy notifications@github.com wrote:

Is this only on Mac? Or do you see it on Windows as well?

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-- William Dempsey, Ph.D. Postdoctoral Scholar Molecular and Computational Biology Dana and David Dornsife College of Letters, Arts and Sciences University of Southern California wdempsey@usc.edu Lab #: 213-821-1818 <(213)%20821-1818>

karlcz commented 7 years ago

You mean you see a small spot turning yellow with the threshold adjustment? If so, try scrolling up or down through the Z stack and see if it gets larger... You'll get a small section if your Z slice falls towards the top or bottom of the ellipsoid region.

karlcz commented 7 years ago

The bug described in this issue was fixed. If there is a different problem, please open an issue specifically for it.