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informatics-isi-edu / synspy

Synaptic segmentation and visualization with fluorescence microscopy
BSD 3-Clause "New" or "Revised" License
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Add and expose more notes #47

Closed karlcz closed 7 years ago

karlcz commented 7 years ago

We should allow entry and display of notes in more places in the model

See #51 for this: It would also help to denormalize notes from related entities in more presentations. Easy fixes should be considered first, without doing invasive model changes if an easy fix is not apparent. It may be better to wait for new front-end features than to do too much temporary work here.

BDemps commented 7 years ago

Hi, the notes that would be great to expose on the Image Pairs and Synaptic Pairs would be: (1) Std. Len (2) "Steps" used (or somehow show whether it is a control or experimental condition, which is really only visible by looking at the "description" of a particular "protocol" definition (3) Issue Date (4) A unique notes section that allows analytical data from Greg/Andrey/Sanjay analysis to be put in directly. e.g., I could put in the number for KL divergence for each (5) # of segments in pre/post that were segmented

BDemps commented 7 years ago

Note: notes are only really interesting for synaptic pairs, not so much for image pairs

BDemps commented 7 years ago

Also, an "ask" from Don, that would be interesting to see, if it is easy enough to implement: On the same page, below where the synapse pairs are located, could we add a histogram of intensity values for the synapses in each image? They can be on separate graphs, but they should at least be on the same scale and shouldn't be normalized.

Or, in the worst case, at least a report of the integrated intensity of all synapses before and after. (This will be a decent indication of whether something bleached or had a crazy loss without even really going into the data itself, do you agree?)

karlcz commented 7 years ago

So this original issue boils down to just adding a text Notes field to Synaptic Pair Study records. The other comments are not about a new Notes field, but rather to also show subject and image info when presenting a study pair record.

karlcz commented 7 years ago

A notes field and data-entry is in the dev system to test along with other updates for a future release.