informatics-isi-edu / synspy

Synaptic segmentation and visualization with fluorescence microscopy
BSD 3-Clause "New" or "Revised" License
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Specification or design doc for the data storage system #67

Closed aandreev0 closed 6 years ago

aandreev0 commented 6 years ago

I currently have no design doc for data storage system. That makes it hard to ask proper questions, let alone design pipeline. We ideally want to be able to write single script that runs whole pipeline given few input parameters, that ultimately generates figures for paper. Right now there are many steps already, and I don't think anyone but Bill knows them and their order. For paper we'll also need some description of the pipeline.

Thus, spec and design doc will increase bus factor, as well as server for better design of code, and ultimately fill paper's methods section

carlkesselman commented 6 years ago

Not quite sure what you are asking here. What pipeline? We should talk. You can probably leverage a bunch of the code I have already implemented for interacting with the data management system.

There is no specification as the design changes frequently given bill’s whims.

Carl

Sent from my iPhone

On Aug 17, 2018, at 7:06 PM, aandreev notifications@github.com<mailto:notifications@github.com> wrote:

I currently have no design doc for data storage system. That makes it hard to ask proper questions, let alone design pipeline. We ideally want to be able to write single script that runs whole pipeline given few input parameters, that ultimately generates figures for paper. Right now there are many steps already, and I don't think anyone but Bill knows them and their order. For paper we'll also need some description of the pipeline.

Thus, spec and design doc will increase bus factor, as well as server for better design of code, and ultimately fill paper's methods section

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karlcz commented 6 years ago

I think this was resolved with an internal document.