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information artifact ontology
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Visualization terms from OBI #8

Closed zhengj2007 closed 9 years ago

zhengj2007 commented 9 years ago

From mcour...@gmail.com on December 02, 2008 16:32:02

Hi,

In OBI we need terms to represent data visualization.

The report figure (IAO_0000059) class and its subclass report graph (IAO_0000038) would need to be moved from IAO-examples, to IAO. Also dot_plot (IAO_0000037), contour plot (IAO_0000057) and density plot (IAO_0000079) would be moved.

Final structure would be: -report figure --- report graph ------ Venn diagram ------ survival curve ------ heatmap ------ histogram ------ dendrogram ------ scatterplot ------ dot plot ------ contour plot ------ density plot

  1. Venn diagram: A Venn diagram is a report graph showing all hypothetically possible logical relations between a finite collection of sets definition source: WEB: http://en.wikipedia.org/wiki/Venn_diagram 2. survival curve A survival curve is a report graph which is a graphical representation of data where the percentage of survival is plotted as a function of time. definition source: WEB: http://www.graphpad.com/www/book/survive.htm 3. dendrogram definition: A dendrogram is a report graph which is a tree diagram frequently used to illustrate the arrangement of the clusters produced by a clustering algorithm.

example of usage: Dendrograms are often used in computational biology to illustrate the clustering of genes.

definition source: WEB: http://en.wikipedia.org/wiki/Dendrogram 4. scatterplot Alternative term: scattergraph Def: A scatter plot is a report graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis definition source: WEB: http://en.wikipedia.org/wiki/Scatterplot I already submitted heatmap ( https://code.google.com/p/information-artifact-ontology/issues/detail?id=2 ) and histogram to IAO ( https://code.google.com/p/information-artifact-ontology/issues/detail?id=1 )

All those would have definition editors PERSON: James Malone, PERSON: Chris Stoeckert, PERSON: Melanie Courtot.

Let me know if you see any problem with the above, otherwise I could implement the changes on the 10th of December.

Thanks, Melanie

Original issue: http://code.google.com/p/information-artifact-ontology/issues/detail?id=8

zhengj2007 commented 9 years ago

From mcour...@gmail.com on December 10, 2008 16:16:21

added Venn diagram: IAO_0000181 survival curve: IAO_0000182 dendrogram: IAO_0000183 scatterplot: IAO_0000184

Status: Done