infretis / infretis

A python library for replica exchange transition interface sampling with infinite swaps
MIT License
6 stars 7 forks source link

Update README.md #85

Closed lukasbaldauf closed 7 months ago

lukasbaldauf commented 7 months ago

Forgot to remove a git checkout line

github-actions[bot] commented 7 months ago

Coverage

Coverage Report
FileStmtsMissCoverMissing
infretis
   __init__.py00100% 
   bin.py14286%19, 25
   scheduler.py160100% 
   setup.py961485%56, 77–78, 83–93, 101, 111
infretis/classes
   __init__.py00100% 
   formatter.py4027681%51, 54–55, 62, 104–105, 120, 189, 201, 210–213, 257, 305, 339, 368–372, 388–390, 394, 437–438, 443, 449, 456–459, 467, 472–477, 491–495, 500, 519, 526–527, 539–546, 564–566, 583, 587–591, 595–600, 608, 671, 721, 737, 784, 791, 915–917, 956–960, 964, 970, 986, 1022
   orderparameter.py1874675%432–452, 456–500
   path.py2718668%78–79, 107, 115–116, 134, 141–142, 159–160, 177–188, 208, 222–225, 269, 271–272, 283–324, 328, 332, 348, 352, 358, 366–370, 373–375, 420–429, 435–438, 446–448, 507–531
   repex.py63510084%118, 208–230, 315–325, 420, 488, 530–531, 537–545, 564, 601–616, 643–690, 697, 734, 817–818, 840, 850, 857–858, 862–863, 867, 900–901, 959, 1031–1034, 1087–1088
   system.py220100% 
infretis/classes/engines
   __init__.py00100% 
   cp2k.py47327442%95, 126–140, 154–158, 224–238, 263–296, 311–335, 352–372, 407, 415–419, 421–427, 431, 447–460, 482–496, 520–525, 551–552, 636–670, 744–745, 753–760, 783, 823–1014, 1018–1025, 1030–1036, 1062, 1073–1074, 1111
   enginebase.py2776377%67, 96–101, 176, 222–223, 445, 467–475, 504, 529–547, 556–557, 562–563, 571–572, 586–624, 628, 633–634, 646–647, 657–658, 694
   engineparts.py2129953%117–119, 140–154, 173–177, 225, 239–241, 300, 383–384, 414–417, 424, 452–456, 462–468, 474–502, 531–583
   factory.py39685%39, 47, 64, 69, 74, 81
   gromacs.py66445931%119–122, 168, 235, 268, 270, 288–295, 313–323, 343–353, 365–379, 394–409, 419, 439–447, 451–454, 475–485, 518–612, 632–657, 661–664, 683–685, 697–703, 732–743, 751–752, 814–828, 832–869, 873–874, 878–955, 959–964, 968–985, 989, 993, 997–1007, 1024–1038, 1052–1087, 1097–1107, 1167–1170, 1177–1178, 1186–1187, 1211, 1220–1223, 1243–1246, 1263–1274, 1288–1289, 1312–1323, 1330–1346, 1366–1375, 1398–1405, 1419–1436, 1453–1455, 1474–1498, 1522–1528, 1533, 1543–1547
   lammps.py24213445%122–157, 188–204, 244, 355–516, 533–535, 574, 594
   turtlemdengine.py137497%162, 205, 305, 351
infretis/core
   __init__.py00100% 
   core.py132894%240–245, 250–252
   tis.py3485584%59–62, 338–339, 347, 416, 428–429, 435, 479–481, 513–514, 528, 579–580, 642–643, 685, 691–693, 768–770, 868–869, 884, 886, 891, 924–926, 938, 940, 955, 968, 997–1000, 1031–1051
infretis/tools
   __init__.py00100% 
   generate_H2_loadpaths.py78780%9–137
   get-interfaces.py63630%1–119
   minutes_since_start.py26260%1–49
   pattern.py63630%1–140
TOTAL4397165662% 

Coverage summary (Python 3.12.2)

Tests Skipped Failures Errors Time
49 0 :zzz: 0 :x: 0 :fire: 23.100s :stopwatch: