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inlabru-org / fmesher

Standalone package for mesh/SPDE/GMRF code from the INLA package
https://inlabru-org.github.io/fmesher/
Mozilla Public License 2.0
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Installation error due to Segmentation fault (core dumped) #12

Open luizpara opened 6 months ago

luizpara commented 6 months ago

Hi there.

I am trying to install your library in R with install.packages("fmesher") in R 4.2.2, Ubuntu 23.04 64bits, but I am getting an error:

R data * moving datasets to lazyload DB inst ** byte-compile and prepare package for lazy loading

caught segfault address 0x55b691bcaefd, cause 'memory not mapped' An irrecoverable exception occurred. R is aborting now ... Segmentation fault (core dumped) ERROR: lazy loading failed for package ‘fmesher’

Do you have any idea what may be going on and how to work around that?

finnlindgren commented 6 months ago

That looks like some binary incompatibility with the binary package, presumably directly from CRAN? What CRAN mirror do you use? You can try installing from source instead, with devtools::install_github(“inlabru-org/fmesher”). What version of Rcpp do you have installed? Some changes in that and related packages recently meant that dependent packages needed to be rebuilt, but since CRAN doesn’t have a mechanism for doing that, it might still have outdated binary builds. I would also recommend upgrading your R installation to the latest version (now 4.3.3).

finnlindgren commented 6 months ago

I'm no longer able to build R version 4.2.2 on my system; it seems to want libcurl 7 and I only have libcurl 8 available in the Ubuntu repos, so I can't easily test this issue.