Originally V and J deletions were determined independently, but for cases where there is no insertion, there can be problems where V and J appear to overlap.
Issue is fixed by reading in the end of V position when determining J deletions, and adding to the deletion count correspondingly.
Addresses edge case for CDR3s with no insertions.
Originally V and J deletions were determined independently, but for cases where there is no insertion, there can be problems where V and J appear to overlap.
Issue is fixed by reading in the end of V position when determining J deletions, and adding to the deletion count correspondingly.