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innate2adaptive / Decombinator

Decombinator v4: fast, error-correcting analysis of TCR repertoires
https://innate2adaptive.github.io/Decombinator/
MIT License
22 stars 8 forks source link

Clustering optimisation #24

Closed tp-peacock closed 3 years ago

tp-peacock commented 3 years ago

Introduces two new packages for Collapsinator - polyleven (for faster Levenshtein distance calculation) and networkx for help in clustering.

Improves speed of clustering in Collapsinator.