innate2adaptive / Decombinator

Decombinator v4: fast, error-correcting analysis of TCR repertoires
https://innate2adaptive.github.io/Decombinator/
MIT License
22 stars 8 forks source link

All chains together #8

Closed tp-peacock closed 7 years ago

tp-peacock commented 7 years ago

ability to specify multiple chains if desired

e.g.

python SC_Decombinator.py -fq R1.fastq -c "a b"

Decombinator will also recognise if mutliple chains are in file name, e.g. alpha_beta_R1.fastq

Output has been changed so that the chain is given as the first element in each output line.