Wrap MATLAB kvl wrappers in Python - Githubissues

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Wrap MATLAB kvl wrappers in Python #20

Closed yujanshrestha closed 6 years ago

yujanshrestha commented 6 years ago

Needed for atlas registration:

[x] kvlCreateImage - Yujan
[x] kvlCreateTransform - done
[x] kvlEvaluateMeshPosition- done
[x] kvlGetAlphasInMeshNodes - done
[x] kvlGetCostAndGradientCalculator - done
[x] kvlGetImageBuffer- done
[x] kvlGetMesh- done
[x] kvlGetMeshNodePositions - Willy
[x] kvlGetOptimizer -done
[x] kvlGetTransformMatrix - Yujan
[x] kvlRasterizeAtlasMesh - Yujan
[x] kvlReadImage - done
[x] kvlReadMeshCollection - done
[x] kvlScaleMesh
[x] kvlSetMeshNodePositions
[x] kvlStepOptimizer- done
[x] kvlWriteImage - Yujan
[ ] kvlColorCodeProbabilityImages.m - only used for visualization
[x] kvlSetAlphasInMeshNodes- does not seem to be used in any meaningful way

Needed for segmentation that is not already needed for registration (defer these until after registration)

[x] kvlWarpMesh - Willy
[x] kvlMergeAlphas - Willy
[x] kvlReadCompressionLookupTable.m - Willy
[x] kvlReadCroppedImage - Willy
[x] kvlSetAlphasInMeshNodes - Willy
[x] kvlSmoothImageBuffer - Willy
[ ] kvlSetImageBuffer- does not seem to be used in any meaningful way
[ ] kvlSmoothMesh - Willy