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ins-amu / SeizureSpreadOnACorticalSurface

Code for computational modeling of seizure spread on a cortical surface using The Virtual Brain
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there are some problem when prepare the environment taa #1

Open zoeeey777 opened 2 years ago

zoeeey777 commented 2 years ago

there are some problems when i prepare the anacoda environment in my laptop , i found that it counldn't find the package e.g. libgcc, dbus, system and so on. The system i use is windows x64. so how can i adress this problem?

sipv commented 2 years ago

Hi, the conda environments, unfortunately, are not cross-platform (and this one was created on Linux). I would think that the best way for you would be to create the environment by installing the important packages by hand. That is, start with environment with Python 2.7 (yes, the code is ancient at this point), and then install numpy, scipy, scikit-learn, and matplotlib matching their versions given in the environment.yml (or doing your best, the exact same versions might not be available on Windows). If interested in the 3D plotting, then add also mayavi. This might be most difficult, I recall that managing its dependencies (particularly vtk) was quite a challenge when updating anything.