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ins-amu / scripts

prepare data for TVB
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calculate right orientation and areas for subcortical structures #4

Closed timpx closed 10 years ago

timpx commented 10 years ago

orientations and areas are currently not calculated by the pipeline for subcortical structure. This could be problematic if for instance we calculate the electric field for sEEG/EEG electrodes, which will be then null.

timpx commented 10 years ago

in the end I copyed the relevant functions from tvb to calculate the average orientations and areas for each subcortical region I think I will do the same for cortical regions, this avoid uploading tvb and configure cortex, which takes a long time. There is a scientific issue here: can we consider subcortical regions as a simple dipole since they do not have the laminar organization with pyramidal cells as in the cortex?