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ins-amu / scripts

prepare data for TVB
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tests with HCP data #64

Closed guiguiw closed 4 years ago

guiguiw commented 5 years ago

Hi，I am new here. I want to run the test in scripts/tests. I find "first run a subject on either your data or with HCP data with the default configuration file", I have the T1 and dMRI data of HCP, but I don't know how to run a subject data with the default configuration file. Is that mean I need to run scripts/tests/test_test.sh first? Then run "bash tests/test_pipeline.sh -c path_to_config_file", path_to_config_file means the location of scripts/example_config.sh? Thanks.

timpx commented 5 years ago

Hi guiguiw, you don't need to run scripts/tests/test_test.sh, this is just for testing purpose. Assuming you properly set up your directories, you need to run:

bash main_surface.sh -c path_to_config_file

You should update your config_file accordingly, in particular setting the HCP option to "yes". I apologize for the documentation which is old and need to be updated, hopefully I can do that very soon. Let me know if it works