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insarlab / MintPy

Miami InSAR time-series software in Python
https://mintpy.readthedocs.io
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minimum version of disk_jobqueue that contains LSFCluster #36

Closed yunjunz closed 5 years ago

yunjunz commented 5 years ago

Hi @2gotgrossman, could you add a minimum version constarint in docs/conda.txt file for dask_jobqueue, both I and @mirzaees encountered the issue that conda install an obsolete version of 0.1, which does not have LSFCluster. I fixed the issue by re-installed a new miniconda3, which later on install the dask_jobqueue with version 0.4.

https://github.com/insarlab/PySAR/blob/d3cac2b0d4c4e97b01a5fb637c5382f43bcf023d/docs/conda.txt#L4

mirzaees commented 5 years ago

@2gotgrossman @yunjunz I installed the dask_jobqueue=0.4 but then I get following error which askes for dask distributed. I follow the instruction but nothing changes:

2019-04-15 09:46:31,186 - INFO - pysarApp.py /nethome/sxm1611/insarlab/infiles/sxm1611/TEMPLATES/test_unittestGalapagosSenDT128.template --end load_data |& tee out_pysar.log 20190415:094631 pysarApp.py /nethome/sxm1611/insarlab/infiles/sxm1611/TEMPLATES/test_unittestGalapagosSenDT128.template --end load_data |& tee out_pysar.log Traceback (most recent call last): File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/dask/distributed.py", line 5, in from distributed import File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/distributed/init.py", line 5, in from .actor import Actor, ActorFuture File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/distributed/actor.py", line 4, in from .client import Future, default_client File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/distributed/client.py", line 29, in from dask.optimization import SubgraphCallable ImportError: cannot import name 'SubgraphCallable'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/nethome/sxm1611/test/testsara/rsmas_insar/sources/PySAR/pysar/pysarApp.py", line 21, in import pysar.workflow #dynamic import for modules used by pysarApp workflow File "/nethome/sxm1611/test/testsara/rsmas_insar/sources/PySAR/pysar/workflow/init.py", line 36, in importlib.import_module(root_module + '.' + module) File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/nethome/sxm1611/test/testsara/rsmas_insar/sources/PySAR/pysar/ifgram_inversion.py", line 24, in from dask.distributed import Client, as_completed File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/dask/distributed.py", line 11, in raise ImportError(msg) ImportError: Dask's distributed scheduler is not installed.

Please either conda or pip install dask distributed:

conda install dask distributed # either conda install pip install dask distributed --upgrade # or pip install 2019-04-15 09:46:33,222 - INFO - pysarApp.py /nethome/sxm1611/insarlab/infiles/sxm1611/TEMPLATES/test_unittestGalapagosSenDT128.template 20190415:094633 pysarApp.py /nethome/sxm1611/insarlab/infiles/sxm1611/TEMPLATES/test_unittestGalapagosSenDT128.template 20190415:094633 (pysarApp.py /nethome/sxm1611/insarlab/infiles/sxm1611/TEMPLATES/test_unittestGalapagosSenDT128.template | tee out_pysar.o) 3>&1 1>&2 2>&3 | tee out_pysar.e Traceback (most recent call last): File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/dask/distributed.py", line 5, in from distributed import * File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/distributed/init.py", line 5, in from .actor import Actor, ActorFuture File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/distributed/actor.py", line 4, in from .client import Future, default_client File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/distributed/client.py", line 29, in from dask.optimization import SubgraphCallable ImportError: cannot import name 'SubgraphCallable'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/nethome/sxm1611/test/testsara/rsmas_insar/sources/PySAR/pysar/pysarApp.py", line 21, in import pysar.workflow #dynamic import for modules used by pysarApp workflow File "/nethome/sxm1611/test/testsara/rsmas_insar/sources/PySAR/pysar/workflow/init.py", line 36, in importlib.import_module(root_module + '.' + module) File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/importlib/init.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/nethome/sxm1611/test/testsara/rsmas_insar/sources/PySAR/pysar/ifgram_inversion.py", line 24, in from dask.distributed import Client, as_completed File "/nethome/sxm1611/test/testsara/rsmas_insar/3rdparty/miniconda3/lib/python3.6/site-packages/dask/distributed.py", line 11, in raise ImportError(msg) ImportError: Dask's distributed scheduler is not installed.

Please either conda or pip install dask distributed:

conda install dask distributed # either conda install pip install dask distributed --upgrade # or pip install