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insight-centre / naisc

Naisc - Automated Linking Tool
Apache License 2.0
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ELEXIS-REST X-API-Key header #7

Open kernc opened 3 years ago

kernc commented 3 years ago

I successfully run the server with ./gradlew bootRun, a server on localhost:8080.

Separately, I run an Elexis REST API node on localhost:8000.

I issue:

% json='{"source":{"endpoint":"http://127.0.0.1:8000", "id":"602749a25065b828f3bfc671", "apiKey":"test"}, "target":{"endpoint":"http://127.0.0.1:8000", "id":"602749a25065b828f3bfc671", "apiKey":"test"}}'

% curl -v -H "Content-Type: application/json" --data "$json" http://localhost:8080/submit 

> POST /submit HTTP/1.1
> Host: localhost:8080
> User-Agent: curl/7.64.0
> Accept: */*
> Content-Type: application/json
> Content-Length: 190
> 
* upload completely sent off: 190 out of 190 bytes
< HTTP/1.1 500 
< Content-Type: application/json
< Transfer-Encoding: chunked
< Date: Sat, 13 Feb 2021 04:20:03 GMT
< Connection: close

In the other window, I see:

Feb 13, 2021 5:20:47 AM org.apache.catalina.core.StandardService startInternal
INFO: Starting service [Tomcat]
Feb 13, 2021 5:20:47 AM org.apache.catalina.core.StandardEngine startInternal
INFO: Starting Servlet engine: [Apache Tomcat/9.0.30]
Feb 13, 2021 5:20:47 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring embedded WebApplicationContext
Feb 13, 2021 5:20:50 AM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring DispatcherServlet 'dispatcherServlet'
Feb 13, 2021 5:20:50 AM org.insightcentre.uld.naisc.elexis.Controller.SubmitLink submitLinkRequest
INFO: [ Loading details for submit request for 8f6824ee-dea9-4b33-a943-05cf558e6380 ]
Feb 13, 2021 5:20:50 AM org.insightcentre.uld.naisc.elexis.Controller.SubmitLink submitLinkRequest
INFO: [ Initiating submit request for 8f6824ee-dea9-4b33-a943-05cf558e6380 ]
Feb 13, 2021 5:20:50 AM org.insightcentre.uld.naisc.elexis.Helper.AsyncDictionaryLinkingHelper prepareAsyncRun
INFO: [ Loading Source details for request: 8f6824ee-dea9-4b33-a943-05cf558e6380 ]
Feb 13, 2021 5:20:50 AM org.apache.catalina.core.StandardWrapperValve invoke
SEVERE: Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [Request processing failed; nested exception is java.lang.RuntimeException: Failed : HTTP error code : 422] with root cause
java.lang.RuntimeException: Failed : HTTP error code : 422
        at org.insightcentre.uld.naisc.elexis.RestService.APIConnection.executeAPICall(APIConnection.java:39)
        at org.insightcentre.uld.naisc.elexis.RestService.ELEXISRest.getAllLemmas(ELEXISRest.java:104)
        at org.insightcentre.uld.naisc.elexis.Helper.AsyncDictionaryLinkingHelper.processDictionary(AsyncDictionaryLinkingHelper.java:108)
        at org.insightcentre.uld.naisc.elexis.Helper.AsyncDictionaryLinkingHelper.prepareAsyncRun(AsyncDictionaryLinkingHelper.java:174)
        at org.insightcentre.uld.naisc.elexis.Helper.AsyncDictionaryLinkingHelper.asyncExecute(AsyncDictionaryLinkingHelper.java:206)
        at org.insightcentre.uld.naisc.elexis.Controller.SubmitLink.submitLinkRequest(SubmitLink.java:77)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.base/java.lang.reflect.Method.invoke(Method.java:566)
        at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:190)
        at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:138)
        at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:106)
        at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:888)
        at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:793)
        at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:87)
        at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1040)
        at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:943)
        at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1006)
        at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:909)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:660)
        at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:883)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:741)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
        at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
        at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
        at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
        at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
        at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:541)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74)
        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
        at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:367)
        at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
        at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:860)
        at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1598)
        at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
        at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
        at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
        at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
        at java.base/java.lang.Thread.run(Thread.java:834)

Calling a REST API node, this works:

% curl -H 'X-API-Key: test' -v http://127.0.0.1:8000/list/602749a25065b828f3bfc671

> GET /list/602749a25065b828f3bfc671 HTTP/1.1
> Host: 127.0.0.1:8000
> User-Agent: curl/7.64.0
> Accept: */*
> X-API-Key: test
> 
< HTTP/1.1 200 OK
< date: Sat, 13 Feb 2021 04:38:05 GMT
< server: uvicorn
< content-length: 203
< content-type: application/json
< set-cookie: session=eyJkaWN0cyI6IFsiNjAyNzQ5YTI1MDY1YjgyOGYzYmZjNjcxIl19.YCdXrQ.ZDuLuo-8reEIB8QDVTWHmN0XOkU; path=/; Max-Age=86400; httponly; samesite=lax
< 
* Connection #0 to host 127.0.0.1 left intact
[{"lemma":"cat","id":"602749a4cf2854678d1baea8","partOfSpeech":"NOUN","language":"en","formats":null},{"lemma":"cat","id":"602749a4cf2854678d1baea9","partOfSpeech":"VERB","language":"en","formats":null}]

But without X-API-Key header, a 422 error:

% curl -v http://localhost:8000/list/602749a25065b828f3bfc671

> GET /list/602749a25065b828f3bfc671 HTTP/1.1
> Host: localhost:8000
> User-Agent: curl/7.64.0
> Accept: */*
> 
< HTTP/1.1 422 Unprocessable Entity
< date: Sat, 13 Feb 2021 04:39:38 GMT
< server: uvicorn
< content-length: 95
< content-type: application/json
< 
* Connection #0 to host localhost left intact
{"detail":[{"loc":["header","X-API-Key"],"msg":"field required","type":"value_error.missing"}]}

as reported by the java.lang.RuntimeException.

Does Naisc ELEXIS/REST API possibly not support apiKey/X-API-Key header?

jmccrae commented 3 years ago

What are you using to implement the ELEXIS API. The reference implementation at https://github.com/elexis-eu/dictionary-service does not implement the X-API-Key aspect of the service.

I am not sure what the issue here is exactly then.