insightsengineering / chevron

Standard TLGs For Clinical Trials Reporting
https://insightsengineering.github.io/chevron/
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initial prototype of ael02 #744

Closed BFalquet closed 3 months ago

BFalquet commented 4 months ago

close #643

thank you for the review

github-actions[bot] commented 4 months ago

badge

Code Coverage Summary

Filename                     Stmts    Miss  Cover    Missing
-------------------------  -------  ------  -------  ------------------------------------------------------------------------------
R/ael01_nollt.R                 10       2  80.00%   54-56
R/ael02.R                       27       0  100.00%
R/aet01.R                       98       1  98.98%   172
R/aet01_aesi.R                 148       1  99.32%   214
R/aet02.R                       44       0  100.00%
R/aet03.R                       76       0  100.00%
R/aet04.R                       88       0  100.00%
R/aet05.R                       44       1  97.73%   116
R/aet05_all.R                   11       0  100.00%
R/aet10.R                       42       0  100.00%
R/assertions.R                  80       6  92.50%   11-16
R/cfbt01.R                     107       0  100.00%
R/checks.R                      14       0  100.00%
R/chevron_tlg-S4class.R         24       0  100.00%
R/chevron_tlg-S4methods.R      149       0  100.00%
R/cmt01a.R                      52       0  100.00%
R/coxt01.R                      49       1  97.96%   130
R/dmt01.R                       38       0  100.00%
R/dst01.R                       94       0  100.00%
R/dtht01.R                     102       6  94.12%   51, 55-59
R/egt02.R                       35       0  100.00%
R/egt03.R                       80       1  98.75%   157
R/egt05_qtcat.R                 78       0  100.00%
R/ext01.R                       59       1  98.31%   51
R/fstg01.R                      43       0  100.00%
R/fstg02.R                      48       0  100.00%
R/kmg01.R                       35       6  82.86%   35-40
R/lbt04.R                       90       0  100.00%
R/lbt05.R                       66       5  92.42%   124-129
R/lbt06.R                       70       3  95.71%   141-144
R/lbt07.R                       93       0  100.00%
R/lbt14.R                       64       0  100.00%
R/lbt15.R                       20       0  100.00%
R/mht01.R                       54       0  100.00%
R/mng01.R                       81       7  91.36%   83, 87-91, 153
R/pdt01.R                       60       0  100.00%
R/pdt02.R                       68       0  100.00%
R/rmpt01.R                      59      11  81.36%   88-97, 132
R/rmpt06.R                     134       3  97.76%   210-213
R/rspt01.R                      73       3  95.89%   156-159
R/rtables_utils.R              325      23  92.92%   51, 68, 119, 243, 264, 409-416, 483, 498-500, 502, 571-577, 587, 608
R/standard_rules.R              13       0  100.00%
R/ttet01.R                     120       3  97.50%   202-205
R/utils.R                      175      25  85.71%   142, 158, 177-179, 296-299, 303-306, 333, 337, 349, 351, 363, 380-382, 404-417
R/vst02.R                       45       1  97.78%   109
R/zzz.R                          1       1  0.00%    2
TOTAL                         3286     111  96.62%

Diff against main

Filename                     Stmts    Miss  Cover
-------------------------  -------  ------  --------
R/ael01_nollt.R                -11      +1  -15.24%
R/ael02.R                      +27       0  +100.00%
R/aet01.R                       +4       0  +0.04%
R/aet01_aesi.R                  -2       0  -0.01%
R/aet02.R                       -6       0  +100.00%
R/aet03.R                       -1       0  +100.00%
R/aet04.R                       -1       0  +100.00%
R/aet05.R                       +4       0  +0.23%
R/aet10.R                       -1       0  +100.00%
R/assertions.R                 -19       0  -1.44%
R/chevron_tlg-S4class.R         +6       0  +100.00%
R/chevron_tlg-S4methods.R      +13      -4  +2.94%
R/cmt01a.R                      -6      -6  +10.34%
R/coxt01.R                      +1       0  +0.04%
R/dmt01.R                       +9       0  +100.00%
R/dst01.R                       -1       0  +100.00%
R/dtht01.R                      -1       0  -0.06%
R/egt02.R                       -2       0  +100.00%
R/egt03.R                       +3       0  +0.05%
R/egt05_qtcat.R                 -1       0  +100.00%
R/ext01.R                       -1       0  -0.03%
R/fstg01.R                      -7       0  +100.00%
R/fstg02.R                      -7       0  +100.00%
R/kmg01.R                       +6      +6  -17.14%
R/lbt04.R                       -1       0  +100.00%
R/lbt05.R                       -1       0  -0.11%
R/lbt06.R                       -2       0  -0.12%
R/lbt07.R                       -1       0  +100.00%
R/lbt14.R                       -2       0  +100.00%
R/mht01.R                      -17       0  +100.00%
R/mng01.R                      -15      +6  -7.60%
R/pdt02.R                       -1       0  +100.00%
R/rmpt01.R                      -6       0  -1.72%
R/rmpt06.R                    +134      +3  +97.76%
R/rtables_utils.R              +25      +4  -0.74%
R/standard_rules.R              +2       0  +100.00%
R/ttet01.R                      +3       0  +0.06%
R/utils.R                      +91     +25  -14.29%
R/vst02.R                       -1       0  -0.05%
R/zzz.R                         +1      +1  +100.00%
TOTAL                         +215     +36  -0.94%

Results for commit: 0295ab174c2f22d9651163551755bd406a238561

Minimum allowed coverage is 80%

:recycle: This comment has been updated with latest results

github-actions[bot] commented 4 months ago

Unit Tests Summary

  1 files   54 suites   2m 42s :stopwatch: 245 tests 175 :white_check_mark:  70 :zzz: 0 :x: 476 runs  304 :white_check_mark: 172 :zzz: 0 :x:

Results for commit 0295ab17.

:recycle: This comment has been updated with latest results.

github-actions[bot] commented 4 months ago

Unit Test Performance Difference

Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
ael02 👶 $+2.67$ $+6$ $+3$ $0$ $0$
kmg01 💚 $3.52$ $-1.36$ $0$ $0$ $0$ $0$
mng01 💚 $14.86$ $-8.06$ $0$ $0$ $0$ $0$
Additional test case details | Test Suite | $Status$ | Time on `main` | $±Time$ | Test Case | |:-----|:----:|:----:|:----:|:-----| | ael02 | 👶 | | $+0.89$ | ael02_can_handle_all_missing_values | | ael02 | 👶 | | $+0.88$ | ael02_functions_work_as_expected | | ael02 | 👶 | | $+0.90$ | ael02_works_with_adae_dataset | | mng01 | 💚 | $2.01$ | $-1.04$ | mng01_works_as_expected_with_custom_argument_values | | mng01 | 💚 | $4.24$ | $-2.39$ | mng01_works_as_expected_with_custom_color_set | | mng01 | 💚 | $1.98$ | $-1.03$ | mng01_works_as_expected_with_default_argument_values | | mng01 | 💚 | $2.17$ | $-1.23$ | mng01_works_with_combination_of_x_variables | | mng01 | 💚 | $2.21$ | $-1.36$ | mng01_works_with_numeric_jitter | | mng01 | 💚 | $2.10$ | $-1.02$ | mng01_works_with_numeric_x_variable |

Results for commit 72f864e654916815a744ec433af286a35c4b99c7

♻️ This comment has been updated with latest results.