insightsengineering / chevron

Standard TLGs For Clinical Trials Reporting
https://insightsengineering.github.io/chevron/
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remove useSource #766

Closed BFalquet closed 1 month ago

BFalquet commented 1 month ago

update script_funs to enhance reproducibility if the source code of the package is not available.

thank you for the review

github-actions[bot] commented 1 month ago

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Code Coverage Summary

Filename                     Stmts    Miss  Cover    Missing
-------------------------  -------  ------  -------  ---------------------------------------------------------------------------------------
R/ael01_nollt.R                  6       0  100.00%
R/ael02.R                       27       0  100.00%
R/ael03.R                       34       0  100.00%
R/aet01_aesi.R                 148       1  99.32%   214
R/aet01.R                      104       5  95.19%   77-80, 183
R/aet02.R                       44       0  100.00%
R/aet03.R                       76       0  100.00%
R/aet04.R                       88       0  100.00%
R/aet05_all.R                   11       0  100.00%
R/aet05.R                       44       1  97.73%   116
R/aet10.R                       42       0  100.00%
R/assertions.R                  93       7  92.47%   11-16, 123
R/cfbt01.R                     107       0  100.00%
R/checks.R                      14       0  100.00%
R/chevron_tlg-S4class.R         24       0  100.00%
R/chevron_tlg-S4methods.R      149       0  100.00%
R/cmt01a.R                      52       0  100.00%
R/coxt01.R                      49       1  97.96%   130
R/dmt01.R                       38       0  100.00%
R/dst01.R                       94       0  100.00%
R/dtht01.R                     102       6  94.12%   51, 55-59
R/egt02.R                       35       0  100.00%
R/egt03.R                       80       1  98.75%   157
R/egt05_qtcat.R                 78       0  100.00%
R/ext01.R                       59       1  98.31%   51
R/fstg01.R                      43       0  100.00%
R/fstg02.R                      48       0  100.00%
R/kmg01.R                       35       6  82.86%   35-40
R/lbt04.R                       90       0  100.00%
R/lbt05.R                       66       5  92.42%   124-129
R/lbt06.R                       70       0  100.00%
R/lbt07.R                       93       0  100.00%
R/lbt14.R                       64       0  100.00%
R/lbt15.R                       20       0  100.00%
R/mht01.R                       55       0  100.00%
R/mng01.R                       95      12  87.37%   86, 90-94, 126-130, 133, 175
R/pdt01.R                       60       0  100.00%
R/pdt02.R                       68       0  100.00%
R/report_null.R                 24       0  100.00%
R/rmpt01.R                      59      11  81.36%   88-97, 132
R/rmpt06.R                     134       3  97.76%   210-213
R/rspt01.R                      73       3  95.89%   156-159
R/rtables_utils.R              319      23  92.79%   51, 68, 119, 243, 264, 372-379, 446, 461-463, 465, 534-540, 550, 571
R/standard_rules.R              13       0  100.00%
R/ttet01.R                     120       3  97.50%   202-205
R/utils.R                      178      30  83.15%   122, 138, 157-159, 231-235, 276-279, 283-286, 313, 317, 329, 331, 343, 360-362, 384-397
R/vst02.R                       45       1  97.78%   109
R/zzz.R                          1       1  0.00%    2
TOTAL                         3371     121  96.41%

Diff against main

Filename                     Stmts    Miss  Cover
-------------------------  -------  ------  --------
R/ael01_nollt.R                -15      -1  +4.76%
R/ael02.R                      +27       0  +100.00%
R/ael03.R                      +34       0  +100.00%
R/aet01_aesi.R                  -2       0  -0.01%
R/aet01.R                      +10      +4  -3.74%
R/aet02.R                       -6       0  +100.00%
R/aet03.R                       -1       0  +100.00%
R/aet04.R                       -1       0  +100.00%
R/aet05.R                       +4       0  +0.23%
R/aet10.R                       -1       0  +100.00%
R/assertions.R                  -6      +1  -1.47%
R/chevron_tlg-S4class.R         +6       0  +100.00%
R/chevron_tlg-S4methods.R      +13      -4  +2.94%
R/cmt01a.R                      -6      -6  +10.34%
R/coxt01.R                      +1       0  +0.04%
R/dmt01.R                       +9       0  +100.00%
R/dst01.R                       -1       0  +100.00%
R/dtht01.R                      -1       0  -0.06%
R/egt02.R                       -2       0  +100.00%
R/egt03.R                       +3       0  +0.05%
R/egt05_qtcat.R                 -1       0  +100.00%
R/ext01.R                       -1       0  -0.03%
R/fstg01.R                      -7       0  +100.00%
R/fstg02.R                      -7       0  +100.00%
R/kmg01.R                       +6      +6  -17.14%
R/lbt04.R                       -1       0  +100.00%
R/lbt05.R                       -1       0  -0.11%
R/lbt06.R                       -2      -3  +4.17%
R/lbt07.R                       -1       0  +100.00%
R/lbt14.R                       -2       0  +100.00%
R/mht01.R                      -16       0  +100.00%
R/mng01.R                       -1     +11  -11.59%
R/pdt02.R                       -1       0  +100.00%
R/report_null.R                +24       0  +100.00%
R/rmpt01.R                      -6       0  -1.72%
R/rmpt06.R                    +134      +3  +97.76%
R/rtables_utils.R              +19      +4  -0.88%
R/standard_rules.R              +2       0  +100.00%
R/ttet01.R                      +3       0  +0.06%
R/utils.R                      +94     +30  -16.85%
R/vst02.R                       -1       0  -0.05%
R/zzz.R                         +1      +1  +100.00%
TOTAL                         +300     +46  -1.15%

Results for commit: 5fc663dca6d7134d5aeef050cae83e34255e9118

Minimum allowed coverage is 80%

:recycle: This comment has been updated with latest results

github-actions[bot] commented 1 month ago

Unit Tests Summary

  1 files   56 suites   2m 46s :stopwatch: 257 tests 186 :white_check_mark:  71 :zzz: 0 :x: 508 runs  330 :white_check_mark: 178 :zzz: 0 :x:

Results for commit 5fc663dc.

:recycle: This comment has been updated with latest results.

github-actions[bot] commented 1 month ago

Unit Test Performance Difference

Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
default_tlg 💚 $12.08$ $-1.28$ $0$ $0$ $0$ $0$

Results for commit d884a83b4dd2cfac3e2b6368213a6b98e4ca4d4e

♻️ This comment has been updated with latest results.