insightsengineering / teal.modules.clinical

Provides teal modules for the standard clinical trials outputs
https://insightsengineering.github.io/teal.modules.clinical/
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Update DESCRIPTION #1196

Closed shajoezhu closed 1 week ago

shajoezhu commented 1 week ago

align to the latest cran releases

Pull Request

Fixes #nnn

github-actions[bot] commented 1 week ago

Unit Tests Summary

    1 files     70 suites   1h 13m 21s :stopwatch:   720 tests   610 :white_check_mark: 110 :zzz: 0 :x: 1 983 runs  1 761 :white_check_mark: 222 :zzz: 0 :x:

Results for commit 0d99b7f1.

:recycle: This comment has been updated with latest results.

github-actions[bot] commented 1 week ago

Unit Test Performance Difference

Test suite performance difference | Test Suite | $Status$ | Time on `main` | $±Time$ | $±Tests$ | $±Skipped$ | $±Failures$ | $±Errors$ | |:-----|:----:|:----:|:-----:|:-------:|:--------:|:------:|:------:| | shinytest2-tm_a_gee | 💔 | $124.99$ | $+8.59$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_a_mmrm | 💔 | $695.28$ | $+10.35$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_g_barchart_simple | 💔 | $217.36$ | $+4.92$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_g_km | 💔 | $240.22$ | $+7.08$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_g_lineplot | 💔 | $83.29$ | $+3.65$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_g_pp_adverse_events | 💔 | $118.19$ | $+6.35$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_g_pp_patient_timeline | 💔 | $222.12$ | $+4.26$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_g_pp_vitals | 💔 | $78.30$ | $+4.15$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_abnormality | 💔 | $63.69$ | $+5.73$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_abnormality_by_worst_grade | 💔 | $64.36$ | $+7.30$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_ancova | 💔 | $88.09$ | $+2.76$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_binary_outcome | 💔 | $72.33$ | $+1.03$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_coxreg | 💔 | $71.12$ | $+3.96$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_events | 💔 | $58.40$ | $+37.41$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_events_by_grade | 💔 | $90.08$ | $+80.46$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_events_summary | 💔 | $60.45$ | $+6.73$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_logistic | 💔 | $57.41$ | $+5.46$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_mult_events | 💔 | $54.79$ | $+22.92$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_pp_basic_info | 💔 | $42.13$ | $+21.83$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_pp_laboratory | 💔 | $123.44$ | $+15.99$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_pp_medical_history | 💔 | $62.57$ | $+3.32$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_pp_prior_medication | 💔 | $75.92$ | $+7.79$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_shift_by_grade | 💔 | $74.64$ | $+38.59$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_smq | 💔 | $54.88$ | $+33.71$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_summary | 💔 | $37.48$ | $+28.54$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_summary_by | 💔 | $74.87$ | $+70.08$ | $0$ | $0$ | $0$ | $0$ | | shinytest2-tm_t_tte | 💔 | $62.08$ | $+20.27$ | $0$ | $0$ | $0$ | $0$ |
Additional test case details | Test Suite | $Status$ | Time on `main` | $±Time$ | Test Case | |:-----|:----:|:----:|:----:|:-----| | shinytest2-tm_a_gee | 💔 | $7.45$ | $+1.16$ | e2e_tm_a_gee_Selection_of_cor_struct_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_a_gee | 💔 | $7.44$ | $+1.02$ | e2e_tm_a_gee_Selection_of_visit_var_does_not_change_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_g_km | 💔 | $11.59$ | $+2.35$ | e2e_tm_g_km_Starts_with_specified_collapsed_comparison_settings. | | shinytest2-tm_t_abnormality_by_worst_grade | 💔 | $9.04$ | $+3.04$ | e2e_tm_t_abnormality_by_worst_grade_Module_initializes_in_teal_without_errors_and_produces_table_output. | | shinytest2-tm_t_events | 💔 | $6.97$ | $+8.53$ | e2e_tm_t_events_Deselection_of_hlt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events | 💔 | $7.24$ | $+13.26$ | e2e_tm_t_events_Deselection_of_llt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events | 💔 | $7.71$ | $+12.35$ | e2e_tm_t_events_Selecting_llt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events_by_grade | 💔 | $7.99$ | $+7.43$ | e2e_tm_t_events_by_grade_Deselection_of_arm_var_throws_validation_error. | | shinytest2-tm_t_events_by_grade | 💔 | $8.92$ | $+14.36$ | e2e_tm_t_events_by_grade_Deselection_of_hlt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events_by_grade | 💔 | $8.66$ | $+2.20$ | e2e_tm_t_events_by_grade_Deselection_of_llt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events_by_grade | 💔 | $11.66$ | $+7.97$ | e2e_tm_t_events_by_grade_Module_initializes_in_teal_without_errors_and_produces_table_output. | | shinytest2-tm_t_events_by_grade | 💔 | $9.22$ | $+12.43$ | e2e_tm_t_events_by_grade_Selecting_arm_var_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events_by_grade | 💔 | $9.29$ | $+12.80$ | e2e_tm_t_events_by_grade_Selecting_hlt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events_by_grade | 💔 | $9.45$ | $+16.93$ | e2e_tm_t_events_by_grade_Selecting_llt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events_by_grade | 💔 | $7.76$ | $+5.91$ | e2e_tm_t_events_by_grade_Starts_with_specified_label_arm_var_hlt_llt_grade_prune_freq_prune_diff_add_total_col_by_grade_drop_arm_levels. | | shinytest2-tm_t_events_summary | 💔 | $7.39$ | $+1.05$ | e2e_tm_t_events_summary_Deselection_of_flag_var_aesi_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_events_summary | 💔 | $7.63$ | $+4.11$ | e2e_tm_t_events_summary_Selecting_arm_var_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_logistic | 💔 | $6.79$ | $+3.56$ | e2e_tm_t_logistic_Deselection_of_arm_var_throws_validation_error. | | shinytest2-tm_t_mult_events | 💔 | $7.52$ | $+2.13$ | e2e_tm_t_mult_events_Deselection_of_arm_var_throws_validation_error. | | shinytest2-tm_t_mult_events | 💔 | $7.47$ | $+3.34$ | e2e_tm_t_mult_events_Deselection_of_hlt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_mult_events | 💔 | $7.29$ | $+9.16$ | e2e_tm_t_mult_events_Deselection_of_llt_throws_validation_error. | | shinytest2-tm_t_mult_events | 💔 | $8.55$ | $+2.60$ | e2e_tm_t_mult_events_Selecting_arm_var_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_mult_events | 💔 | $8.23$ | $+3.30$ | e2e_tm_t_mult_events_Selecting_hlt_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_mult_events | 💔 | $6.94$ | $+1.92$ | e2e_tm_t_mult_events_Starts_with_specified_label_arm_var_hlt_llt_add_total_drop_arm_levels. | | shinytest2-tm_t_pp_basic_info | 💔 | $7.46$ | $+15.60$ | e2e_tm_t_pp_basic_info_Module_initializes_in_teal_without_errors_and_produces_table_output. | | shinytest2-tm_t_pp_basic_info | 💔 | $5.75$ | $+3.64$ | e2e_tm_t_pp_basic_info_Starts_with_specified_label_patient_id_vars. | | shinytest2-tm_t_pp_laboratory | 💔 | $8.58$ | $+2.06$ | e2e_tm_t_pp_laboratory_Deselection_of_patient_id_throws_validation_error. | | shinytest2-tm_t_pp_laboratory | 💔 | $8.37$ | $+2.68$ | e2e_tm_t_pp_laboratory_Module_initializes_in_teal_without_errors_and_produces_table_output. | | shinytest2-tm_t_pp_laboratory | 💔 | $6.78$ | $+1.35$ | e2e_tm_t_pp_laboratory_Selecting_param_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_pp_laboratory | 💔 | $6.73$ | $+2.54$ | e2e_tm_t_pp_laboratory_Selecting_paramcd_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_pp_laboratory | 💔 | $7.01$ | $+1.77$ | e2e_tm_t_pp_laboratory_Selecting_patient_id_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_pp_prior_medication | 💔 | $6.30$ | $+1.71$ | e2e_tm_t_pp_prior_medication_Selecting_cmdecod_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_pp_prior_medication | 💔 | $6.32$ | $+1.24$ | e2e_tm_t_pp_prior_medication_Selecting_cmindc_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_shift_by_grade | 💔 | $8.38$ | $+10.32$ | e2e_tm_t_shift_by_grade_Deselection_of_arm_var_throws_validation_error. | | shinytest2-tm_t_shift_by_grade | 💔 | $8.49$ | $+5.15$ | e2e_tm_t_shift_by_grade_Deselection_of_paramcd_throws_validation_error. | | shinytest2-tm_t_shift_by_grade | 💔 | $8.53$ | $+1.71$ | e2e_tm_t_shift_by_grade_Deselection_of_worst_flag_throws_validation_error. | | shinytest2-tm_t_shift_by_grade | 💔 | $10.17$ | $+6.49$ | e2e_tm_t_shift_by_grade_Selecting_paramcd_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_shift_by_grade | 💔 | $9.06$ | $+13.39$ | e2e_tm_t_shift_by_grade_Selecting_worst_flag_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_smq | 💔 | $6.85$ | $+2.96$ | e2e_tm_t_smq_Deselection_of_arm_var_throws_validation_error. | | shinytest2-tm_t_smq | 💔 | $6.51$ | $+5.15$ | e2e_tm_t_smq_Deselection_of_paramcd_throws_validation_error. | | shinytest2-tm_t_smq | 💔 | $6.95$ | $+6.70$ | e2e_tm_t_smq_Selecting_arm_var_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_smq | 💔 | $6.89$ | $+10.76$ | e2e_tm_t_smq_Selecting_paramcd_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_smq | 💔 | $6.32$ | $+6.66$ | e2e_tm_t_smq_Starts_with_specified_label_arm_var_llt_baskets_sort_criteria_add_total_drop_arm_levels. | | shinytest2-tm_t_summary | 💔 | $6.17$ | $+2.68$ | e2e_tm_t_summary_Deselection_of_arm_var_throws_validation_error. | | shinytest2-tm_t_summary | 💔 | $5.95$ | $+3.16$ | e2e_tm_t_summary_Deselection_of_summarize_vars_throws_validation_error. | | shinytest2-tm_t_summary | 💔 | $6.27$ | $+9.18$ | e2e_tm_t_summary_Selecting_arm_var_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_summary | 💔 | $6.14$ | $+2.12$ | e2e_tm_t_summary_Selecting_summarize_vars_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_summary | 💔 | $5.55$ | $+10.66$ | e2e_tm_t_summary_Starts_with_specified_label_arm_var_summarize_vars_useNA_denominator. | | shinytest2-tm_t_summary_by | 💔 | $7.28$ | $+5.48$ | e2e_tm_t_summary_by_Deselection_of_arm_var_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_summary_by | 💔 | $14.18$ | $+4.92$ | e2e_tm_t_summary_by_Deselection_of_arm_var_throws_validation_error. | | shinytest2-tm_t_summary_by | 💔 | $7.14$ | $+2.22$ | e2e_tm_t_summary_by_Deselection_of_summarize_vars_throws_validation_error. | | shinytest2-tm_t_summary_by | 💔 | $8.59$ | $+11.30$ | e2e_tm_t_summary_by_Module_initializes_in_teal_without_errors_and_produces_table_output. | | shinytest2-tm_t_summary_by | 💔 | $22.90$ | $+22.10$ | e2e_tm_t_summary_by_Selecting_arm_var_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_summary_by | 💔 | $7.67$ | $+4.27$ | e2e_tm_t_summary_by_Selecting_summarize_vars_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_summary_by | 💔 | $7.10$ | $+19.77$ | e2e_tm_t_summary_by_Starts_with_specified_label_arm_var_paramcd_by_vars_summarize_vars_useNA_numeric_stats_add_total_parallel_vars_row_groups_drop_zero_levels. | | shinytest2-tm_t_tte | 💔 | $7.10$ | $+6.77$ | e2e_tm_t_tte_Deselection_of_arm_var_throws_validation_error. | | shinytest2-tm_t_tte | 💔 | $8.65$ | $+4.80$ | e2e_tm_t_tte_Module_initializes_in_teal_without_errors_and_produces_table_output. | | shinytest2-tm_t_tte | 💔 | $7.67$ | $+1.93$ | e2e_tm_t_tte_Selecting_paramcd_changes_the_table_and_does_not_throw_validation_errors. | | shinytest2-tm_t_tte | 💔 | $7.85$ | $+5.36$ | e2e_tm_t_tte_Selecting_strata_var_changes_the_table_and_does_not_throw_validation_errors. |

Results for commit 2fd0781402c37f71a9075fded4f432bf4b616895

♻️ This comment has been updated with latest results.