Open guj54 opened 1 year ago
I have observed the same with both tm_g_ipp()
and tm_g_lineplot()
so I assume this is a global issue. Here's a reproducible example that shows changing the plot theme does not work.
library(teal.modules.clinical)
library(ggplot2)
library(nestcolor)
adsl <- tmc_ex_adsl %>% dplyr::slice(1:20)
adlb <- tmc_ex_adlb %>% dplyr::filter(USUBJID %in% adsl$USUBJID)
adsl <- df_explicit_na(adsl)
adlb <- df_explicit_na(adlb) %>% dplyr::filter(AVISIT != "SCREENING")
app <- init(
data = cdisc_data(
cdisc_dataset("ADSL", adsl),
cdisc_dataset("ADLB", adlb)
),
modules = modules(
tm_g_ipp(
label = "Individual Patient Plot",
dataname = "ADLB",
arm_var = choices_selected(
value_choices(adlb, "ARMCD"),
"ARM A"
),
paramcd = choices_selected(
value_choices(adlb, "PARAMCD"),
"ALT"
),
aval_var = choices_selected(
variable_choices(adlb, c("AVAL", "CHG")),
"AVAL"
),
avalu_var = choices_selected(
variable_choices(adlb, c("AVALU")),
"AVALU",
fixed = TRUE
),
id_var = choices_selected(
variable_choices(adlb, c("USUBJID")),
"USUBJID",
fixed = TRUE
),
visit_var = choices_selected(
variable_choices(adlb, c("AVISIT")),
"AVISIT"
),
base_var = choices_selected(
variable_choices(adlb, c("BASE")),
"BASE",
fixed = TRUE
),
add_baseline_hline = FALSE,
separate_by_obs = FALSE,
ggplot2_args = teal.widgets::ggplot2_args(
theme = list(legend.position = "top", text = element_text(size = 20))
)
)
)
)
if (interactive()) {
shinyApp(ui = app$ui, server = app$server)
}
R version 4.2.0 (2022-04-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.6 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggplot2_3.4.2 nestcolor_0.1.2
[3] teal.modules.clinical_0.8.15 tern_0.8.5
[5] rtables_0.6.2 formatters_0.5.1
[7] teal_0.13.0 teal.transform_0.3.0
[9] magrittr_2.0.3 teal.data_0.2.0
[11] shiny_1.7.4.1
loaded via a namespace (and not attached):
[1] sass_0.4.7 tidyr_1.3.0 jsonlite_1.8.7 splines_4.2.0
[5] R.utils_2.12.2 bslib_0.5.0 teal.slice_0.3.0 Rdpack_2.4
[9] assertthat_0.2.1 teal.code_0.3.0 tern.gee_0.1.0 yaml_2.3.7
[13] pillar_1.9.0 backports_1.4.1 lattice_0.20-45 glue_1.6.2
[17] teal.widgets_0.3.0 digest_0.6.33 promises_1.2.0.1 rbibutils_2.2.13
[21] checkmate_2.2.0 colorspace_2.1-0 R.oo_1.25.0 htmltools_0.5.5
[25] httpuv_1.6.11 Matrix_1.6-0 pkgconfig_2.0.3 broom_1.0.5
[29] logger_0.2.2 purrr_1.0.1 xtable_1.8-4 mvtnorm_1.2-2
[33] scales_1.2.1 fontawesome_0.5.1 later_1.3.1 emmeans_1.8.7
[37] tibble_3.2.1 styler_1.10.1 farver_2.1.1 generics_0.1.3
[41] ellipsis_0.3.2 cachem_1.0.8 withr_2.5.0 shinyjs_2.1.0
[45] shinyvalidate_0.1.2 geepack_1.3.9 cli_3.6.1 survival_3.3-1
[49] mime_0.12 memoise_2.0.1 estimability_1.4.1 evaluate_0.21
[53] R.methodsS3_1.8.2 fansi_1.0.4 R.cache_0.16.0 nlme_3.1-157
[57] MASS_7.3-56 forcats_1.0.0 teal.reporter_0.1.1 tools_4.2.0
[61] lifecycle_1.0.3 munsell_0.5.0 compiler_4.2.0 jquerylib_0.1.4
[65] rlang_1.1.1 grid_4.2.0 rstudioapi_0.15.0 labeling_0.4.2
[69] rmarkdown_2.23 shinyWidgets_0.7.6 gtable_0.3.3 teal.logger_0.1.1
[73] R6_2.5.1 knitr_1.43 dplyr_1.1.2 fastmap_1.1.1
[77] utf8_1.2.3 Rcpp_1.0.11 vctrs_0.6.3 tidyselect_1.2.0
[81] xfun_0.39
What happened?
It seems that the parameter “theme” doesn’t work. For example, when I have a lineplot and I want the caption to be at the left side, I use the following code:
tm_g_lineplot( ... ggplot2_args=teal.widgets::ggplot2_args( labs = list(caption = "caption"), theme = list(plot.caption = element_text(hjust = 0)) ) )
but it seems the theme is ignored, since the caption still appears on the right side (default), and when I click on “show R code”, the caption is there but plot.caption is missing.sessionInfo()
No response
Relevant log output
No response
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