Fix the e2e test failure in the integration tests

[vedhav]

The root cause of the issue was that the chromote browser was unable to render the PDF file without a plugin with the following error in the terminal:

  ── Error ('test-shinytest2-tm_file_viewer.R:84:3'): e2e - tm_file_viewer: Shows selected url ──
  Error in `app_wait_for_idle(self, private, duration = duration, timeout = timeout)`: An error occurred while waiting for Shiny to be stable
  Backtrace:
      ▆
   1. └─app_driver$click(selector = "[id= '6_anchor']") at test-shinytest2-tm_file_viewer.R:84:3
   2.   └─self$wait_for_idle()
   3.     └─shinytest2:::app_wait_for_idle(self, private, duration = duration, timeout = timeout)
   4.       └─shinytest2:::app_abort(self, private, "An error occurred while waiting for Shiny to be stable")
   5.         └─rlang::abort(..., app = self, call = call)

Note that this test is a bit flaky, I was only able to reproduce the error a few times. Sometimes it passed without any error.

To reproduce this issue you can try the following: Please make sure you have the dev version of teal.

app_driver <- teal:::TealAppDriver$new(
  data = teal.data::teal_data(iris = iris),
  modules = teal.modules.general::tm_file_viewer(
    input_path = list(
      url = "https://fda.gov/files/drugs/published/Portable-Document-Format-Specifications.pdf"
    )
  )
)

app_driver$open_url()
app_driver$view()

The URL in the app_driver$open_url() works fine

The URL in the app_driver$view() shows the error Couldn't load plugin.

The fix is to use some other file format, here we use a PNG file to fix this. In the future, we should test all the files and make sure they work.

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CLA Assistant Lite bot ✅ All contributors have signed the CLA

[vedhav]

I have read the CLA Document and I hereby sign the CLA

[github-actions[bot]]

Code Coverage Summary

Filename                      Stmts    Miss  Cover    Missing
--------------------------  -------  ------  -------  ------------------------------------
R/tm_a_pca.R                    827     827  0.00%    108-1068
R/tm_a_regression.R             773     773  0.00%    153-1031
R/tm_data_table.R               185     185  0.00%    93-332
R/tm_file_viewer.R              173     173  0.00%    44-252
R/tm_front_page.R               133     122  8.27%    70-228
R/tm_g_association.R            330     330  0.00%    135-537
R/tm_g_bivariate.R              672     410  38.99%   303-769, 810, 921, 938, 956, 967-989
R/tm_g_distribution.R          1050    1050  0.00%    122-1311
R/tm_g_response.R               351     351  0.00%    154-578
R/tm_g_scatterplot.R            722     722  0.00%    230-1053
R/tm_g_scatterplotmatrix.R      278     259  6.83%    165-472, 533, 547
R/tm_missing_data.R            1069    1069  0.00%    92-1317
R/tm_outliers.R                 985     985  0.00%    134-1263
R/tm_t_crosstable.R             251     251  0.00%    141-440
R/tm_variable_browser.R         830     825  0.60%    79-1071, 1109-1293
R/utils.R                        99      96  3.03%    82-267
R/zzz.R                           2       2  0.00%    2-3
TOTAL                          8730    8430  3.44%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: 7c53c47324ac38d8169cd36425a2e8f8fcd90086

Minimum allowed coverage is 80%

:recycle: This comment has been updated with latest results

[vedhav]

After replacing the PDF url with a PNG URL the chromote browser was able to render the file without any issue.

The URL in the app_driver$open_url() works fine

The URL in the app_driver$view() also works fine

[github-actions[bot]]

Unit Tests Summary

  1 files   22 suites   10m 18s :stopwatch: 147 tests 147 :white_check_mark: 0 :zzz: 0 :x: 478 runs  478 :white_check_mark: 0 :zzz: 0 :x:

Results for commit 7c53c473.

:recycle: This comment has been updated with latest results.

[github-actions[bot]]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
shinytest2-tm_a_pca	💚	$96.12$	$-3.47$	$0$	$0$	$0$	$0$
shinytest2-tm_a_regression	💚	$41.88$	$-2.30$	$0$	$0$	$0$	$0$
shinytest2-tm_data_table	💚	$18.11$	$-1.27$	$0$	$0$	$0$	$0$
shinytest2-tm_file_viewer	💚	$17.71$	$-1.97$	$0$	$0$	$0$	$0$
shinytest2-tm_misssing_data	💚	$33.21$	$-1.06$	$0$	$0$	$0$	$0$
shinytest2-tm_outliers	💚	$84.75$	$-1.74$	$0$	$0$	$0$	$0$
shinytest2-tm_variable_browser	💔	$48.87$	$+1.01$	$0$	$0$	$0$	$0$

Results for commit a6e647b696444b441c349534fa419794aeb2cb40

♻️ This comment has been updated with latest results.

[m7pr]

There is a different R CMD CHeck error that I see in this PR and in my other PR in this repo

[vedhav]

Yes, that's right @m7pr! I cannot reproduce this error in my local as well. There are 8 errors in the CI. 5 in tm_missing_data and 3 in tm_front_page All of them are during the app driver initialization:

app_driver <- app_driver_tm_front_page()
app_driver <- app_driver_tm_missing_data()

With the error log:

  Error in `app_initialize(self, private, app_dir = app_dir, ..., load_timeout = load_timeout, 
      timeout = timeout, wait = wait, expect_values_screenshot_args = expect_values_screenshot_args, 
      screenshot_args = screenshot_args, check_names = check_names, 
      name = name, variant = variant, view = view, height = height, 
      width = width, seed = seed, clean_logs = clean_logs, shiny_args = shiny_args, 
      render_args = render_args, options = options)`: Shiny app did not become stable in 1e+05ms.
  Message: An error occurred while waiting for Shiny to be stable
  Caused by error in `app_wait_for_idle()`:
  ! An error occurred while waiting for Shiny to be stable