insightsengineering / teal.modules.hermes

RNA-seq analysis modules to add to a teal application
https://insightsengineering.github.io/teal.modules.hermes/
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Update `rtables` staged dep #304

Closed edelarua closed 1 year ago

edelarua commented 1 year ago

Closes #303

github-actions[bot] commented 1 year ago

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Code Coverage Summary

Filename              Stmts    Miss  Cover    Missing
------------------  -------  ------  -------  -------------------------------------------------------------------------------------------------------------------------------
R/adtteSpec.R           156     113  27.56%   248-383
R/assaySpec.R            44      36  18.18%   103-142
R/barplot.R             169     136  19.53%   40-64, 123-259
R/boxplot.R             172     144  16.28%   41-65, 119-260
R/checkmate.R            18       9  50.00%   110-118
R/experimentSpec.R       89      56  37.08%   97, 215-282
R/forestplot.R          197     172  12.69%   60-91, 147-312
R/geneSpec.R            255     153  40.00%   153-168, 297-481
R/km.R                  189     158  16.40%   63-92, 153-307
R/pca.R                 355     272  23.38%   35-55, 163-464
R/quality.R             298     228  23.49%   18-109, 203-431
R/sampleVarSpec.R       232     103  55.60%   291, 310-316, 322-329, 331, 339-351, 353-354, 356, 359, 367-371, 373-388, 393-417, 420-424, 426, 433-443, 445-446, 454, 499-516
R/scatterplot.R         167     137  17.96%   40-64, 122-258
R/utils.R                16       5  68.75%   74-78
R/volcanoplot.R         193     163  15.54%   35-56, 111-280
R/zzz.R                   1       1  0.00%    2
TOTAL                  2551    1886  26.07%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: f61744246544ed9691c18c4d87dd4547c1df06d7

Minimum allowed coverage is 80%

:recycle: This comment has been updated with latest results

github-actions[bot] commented 1 year ago

Unit Tests Summary

  1 files  15 suites   25s :stopwatch: 56 tests 34 :heavy_check_mark: 22 :zzz: 0 :x: 76 runs  54 :heavy_check_mark: 22 :zzz: 0 :x:

Results for commit 29070da2.

github-actions[bot] commented 1 year ago

Unit Test Performance Difference

Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
adtteSpec 💚 $27.93$ $-4.15$ $0$ $0$ $0$ $0$
Additional test case details | Test Suite | $Status$ | Time on `main` | $±Time$ | Test Case | |:-----|:----:|:----:|:----:|:-----| | adtteSpec | 💚 | $13.63$ | $-2.17$ | h_km_mae_to_adtte_function_works_as_expected_with_a_single_gene |

Results for commit f61744246544ed9691c18c4d87dd4547c1df06d7

♻️ This comment has been updated with latest results.