insightsengineering / teal.modules.hermes

RNA-seq analysis modules to add to a teal application
https://insightsengineering.github.io/teal.modules.hermes/
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553 change level in `log_shiny_input_changes` and exclude plot sizes in logging #386

Closed m7pr closed 4 months ago

m7pr commented 4 months ago

Part of https://github.com/insightsengineering/coredev-tasks/issues/553 and https://github.com/insightsengineering/coredev-tasks/issues/568

m7pr commented 4 months ago

@danielinteractive just a small followup after https://github.com/insightsengineering/teal.modules.hermes/pull/382

Changes:

To see logs about shiny input changes you need to run options(teal.log_level = "TRACE") before you run library(teal.modules.hermes).

github-actions[bot] commented 4 months ago

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Code Coverage Summary

Filename              Stmts    Miss  Cover    Missing
------------------  -------  ------  -------  -------------------------------------------------------------------------------------------------------------------------------
R/adtteSpec.R           171     124  27.49%   253-401
R/assaySpec.R            54      40  25.93%   104-147
R/barplot.R             188     152  19.15%   39-66, 129-280
R/boxplot.R             190     159  16.32%   40-67, 125-279
R/checkmate.R            18       9  50.00%   110-118
R/experimentSpec.R       91      58  36.26%   97, 215-284
R/forestplot.R          214     186  13.08%   58-92, 152-327
R/geneSpec.R            257     154  40.08%   154-169, 296-481
R/km.R                  208     174  16.35%   61-92, 156-326
R/pca.R                 367     284  22.62%   34-56, 165-477
R/quality.R             320     247  22.81%   18-110, 208-454
R/sampleVarSpec.R       237     104  56.12%   300, 319-328, 334-341, 343, 351-363, 365-366, 368, 371, 379-383, 385-400, 405-429, 432-436, 438, 445-455, 457-458, 466, 511-528
R/scatterplot.R         181     148  18.23%   39-65, 127-273
R/utils.R                16       0  100.00%
R/volcanoplot.R         204     174  14.71%   34-57, 113-293
R/zzz.R                   2       2  0.00%    2-3
TOTAL                  2718    2015  25.86%

Diff against main

Filename             Stmts    Miss  Cover
-----------------  -------  ------  -------
R/sampleVarSpec.R        0      -1  +0.42%
TOTAL                    0      -1  +0.04%

Results for commit: dc551f6798ec813dfd6e97080df79160a2dc224c

Minimum allowed coverage is 80%

:recycle: This comment has been updated with latest results

github-actions[bot] commented 4 months ago

Unit Tests Summary

 1 files  15 suites   8s :stopwatch: 56 tests 43 :white_check_mark: 13 :zzz: 0 :x: 94 runs  81 :white_check_mark: 13 :zzz: 0 :x:

Results for commit dc551f67.

:recycle: This comment has been updated with latest results.