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insightsengineering / tern

Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials
https://insightsengineering.github.io/tern/
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tern switch from staged-dependencies to setup-r-dependencies for deps install #1340

Closed shajoezhu closed 3 weeks ago

shajoezhu commented 1 month ago

TODO:

  1. edit .github/worflows/check.yaml 1.1 adding line deps-installation-method: setup-r-dependencies under with: below these jobs,

    • roxygen
    • coverage
    • r-cmd-non-cran
    • r-cmd

    1.2 below deps-installation-method: setup-r-dependencies add its option if applicable (i.e. staged_dependencies.yaml has upstream entriex), e.g. for tern, it has upsteam rtables, formatters, and nestcolor

        insightsengineering/nestcolor
    insightsengineering/rtables
    insightsengineering/formatters

    make sure lookup-refs has the same indentation as deps-installation-method

  2. rm staged_dependencies.yaml

see this PR for example https://github.com/insightsengineering/formatters/pull/325/files