AACT database name to query (the rest of the database connection parameters should be in .env)
This will be needed for #15 because the current pipeline assumes that the only valid study record in the *.jsonl files is the one to process.
Possible approach is to create a JSON file with these parameters and set an environment variable to the path of that JSON file. Recommending a JSON file here (over say, YAML) because DuckDB can read from that JSON file.
The parameters for an analysis are:
.env)This will be needed for #15 because the current pipeline assumes that the only valid study record in the
*.jsonlfiles is the one to process.Possible approach is to create a JSON file with these parameters and set an environment variable to the path of that JSON file. Recommending a JSON file here (over say, YAML) because DuckDB can read from that JSON file.