If there is some "Rotamers" gene/s, take into account the CB of its/their residues to decide the zone which is object of contacts/clashes evaluation.
Now, the evaluated zone will be all the atoms at a distance <= radius from every atom of the probes and from the CB atoms of the rotamers residues.
If there is some "Rotamers" gene/s, take into account the CB of its/their residues to decide the zone which is object of contacts/clashes evaluation. Now, the evaluated zone will be all the atoms at a distance <= radius from every atom of the probes and from the CB atoms of the rotamers residues.