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insilicomedicine / BiAAE

Molecular Generation for Desired Transcriptome Changes with Adversarial Autoencoders
MIT License
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Regarding of ordering the L1000 genes #3

Closed hmkim closed 3 years ago

hmkim commented 3 years ago

Hi,

I set-up the BiAAE from this github.

When I try to run the new dataset, how can I prepare the expression data? (e.g L1000 Knockdown)

I wonder the ordering for L1000 genes (e.g landmark 978 genes) as input of BiAAE model.

Thank you in advance!

hmkim commented 3 years ago

Sorry. I missed the data.

robust_normalized_controls.npz or robust_normalized_tumors.npz have the gene information in columns.