insitro redun issues - Githubissues

insitro / redun

Yet another redundant workflow engine

https://insitro.github.io/redun/

Apache License 2.0

510 stars 43 forks source link

issues

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Fix a case where job completion wasn't being detected.

#52 dakoner closed 2 years ago
0
Checks k8s server version, disable array job if server is too old

#51 dakoner closed 2 years ago
0
Get k8s server version, default to no array jobs if server is too old.

#50 dakoner closed 2 years ago
0
adding graphviz-dev in Dockerfile to install with apt, and pygraphviz …

#49 annashch-insitro closed 2 years ago
0
Code packaging for script tasks

#48 spitz-dan-l opened 2 years ago
0
Pass self.region to submit_command() from AWSBatchExecutor._submit_single_job()

#47 spitz-dan-l closed 2 years ago
0
Task-specific code packaging

#46 spitz-dan-l opened 2 years ago
1
Quality of life improvements for kubernetes executor

#45 ricomnl closed 2 years ago
3
Add creation of namespace; ignore error if it already exists.

#44 dakoner closed 2 years ago
1
K8s dakoner create namespace

#43 dakoner closed 2 years ago
0
Memory limits for local executor

#42 jshleap opened 2 years ago
3
Scheduler becomes a bottleneck when tasks return large python objects

#41 spitz-dan-l opened 2 years ago
0
Revert 1 k8s improvements

#40 ricomnl closed 2 years ago
0
Add Docker image as task option

#39 mstone-modulus closed 2 years ago
9
Bump pyspark from 3.1.1 to 3.1.3

#38 dependabot[bot] closed 2 years ago
0
working on fixing docs build

#37 mattrasmus closed 2 years ago
0
Add missing data.tsv and fix cleanup default

#36 mattrasmus closed 2 years ago
1
Docker executor: No such container

#35 ricomnl closed 2 years ago
3
Google cloud

#34 jshleap closed 1 year ago
6
Fixed typos and minor grammatical stuff like missing commas, etc. in the documentation and README.md

#33 ricomnl closed 2 years ago
0
Update README.md

#32 sammun-insitro closed 2 years ago
0
redun does not execute any code for a simple example

#31 elanmart closed 2 years ago
4
Running redun pipelines locally with Docker

#30 ricomnl closed 2 years ago
7
Conda executor and initial example

#29 spitz-dan-l closed 1 year ago
1
Simplify set_arg_defaults.

#28 lucaswiman closed 2 years ago
3
Cleaning up Batch jobs on unexpected termination

#27 spitz-dan-l opened 2 years ago
1
Integrate genomics libraries in Spark support

#26 heuermh opened 2 years ago
1
SLURM/HPC executor

#25 multimeric opened 2 years ago
3
AWS Batch executor enhancements: shared memory requirements, and more faithful local dev experience

#24 spitz-dan-l closed 2 years ago
7
Hashing a Task to include its dependencies

#23 elanmart opened 2 years ago
2
Add k8s executor

#22 mattrasmus closed 1 year ago
5
Tempdir in script

#21 spitz-dan-l opened 2 years ago
0
For script tasks, `tempdir=True` with remote executor produces an error

#20 spitz-dan-l opened 2 years ago
2
K8s executor implementation

#19 dakoner closed 2 years ago
3
Setting up the environment prior to task execution

#18 spitz-dan-l closed 2 years ago
3
Config option `db_aws_secret_name` only works if the secret is in `us-west-2`

#17 spitz-dan-l closed 2 years ago
2
Code packaging files in parent directories

#16 spitz-dan-l opened 2 years ago
2
Custom commandline argument parsing

#15 spitz-dan-l closed 2 years ago
2
SQLalchemy caching warning

#14 bbremer closed 2 years ago
3
No need to use editable mode for redun install in examples

#13 mattrasmus closed 2 years ago
0
Staging files

#12 lyin-vir closed 2 years ago
2
Fixes for several problems davidek saw

#11 davidekhub closed 2 years ago
2
Nesting tasks with different executors: confusing results

#10 dakoner closed 2 years ago
3
Can't stage out directory trees

#9 dakoner closed 2 years ago
2
Use pathlib.Path instead of strings for path

#8 flying-sheep opened 2 years ago
0
Use subprocess.run/check_output/… in examples

#7 flying-sheep closed 2 years ago
1
[TypeError: Expressions of unknown length cannot be iterated] when trying to iterate on task output

#6 lyin-vir closed 2 years ago
2
Fix typos discovered by codespell

#5 cclauss closed 2 years ago
0
GitHub Action to run tox on every pull request

#4 cclauss closed 2 years ago
0
Import Executor for lines 36 and 38

#3 cclauss closed 2 years ago
0

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