NT nucleotide-level splice site prediction

instadeepai / nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

https://www.biorxiv.org/content/10.1101/2023.01.11.523679v2

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NT nucleotide-level splice site prediction #41

Closed pabloacera closed 8 months ago

pabloacera commented 10 months ago

Hi, Thank you for sharing your paper and code! I was wondering if you are planning on making available the code for the NT fine-tuned for nucleotide-level splice site prediction featured in Figure 5d. Thank you so much for considering my request!

dallatt commented 8 months ago

Hello,

I suggest you check out the SegmentNT model that we just released, where you can not only predict splice sites acceptor and donor, but a set of 12 other genomic features for each input nucleotides!

Best, Hugo