Cannot download the pre-training weight

instadeepai / nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

https://www.biorxiv.org/content/10.1101/2023.01.11.523679v2

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Cannot download the pre-training weight #59

Closed HelloWorldLTY closed 6 months ago

HelloWorldLTY commented 7 months ago

Thanks for your work. It seems that we cannot download the pre-training weights with the example codes:

/home/tl688/.cache/nucleotide_transformer/1B_agro_nt/hyperparams.json: 100%|██████████| 1.24k/1.24k [00:00<00:00, 6.99kB/s]
/home/tl688/.cache/nucleotide_transformer/1B_agro_nt/ckpt.joblib:   0%|          | 0.00/3.97G [00:00<?, ?B/s]

The second process does not change for a long time. Thanks a lot.

dallatt commented 6 months ago

Hello @HelloWorldLTY ,

This comes from interactions between tqdm and jupyter notebook. You can bypass it by disabling tqdm, or I have just added a verbose argument to get_pretrained_model which when set to False will dot display a progress bar and therefore not trigger the problem.

Best, Hugo

HelloWorldLTY commented 6 months ago

Hi, I think it is not a problem of displayment. I have cheked that the job lib file is always 0:

Is it possible to be resolved by setting the false argument? Thanks.