how to get the segmentation dataset of genomics elements

instadeepai / nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

https://www.biorxiv.org/content/10.1101/2023.01.11.523679v2

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how to get the segmentation dataset of genomics elements #67

Closed lightyisu closed 5 months ago

lightyisu commented 5 months ago

hi,thanks to your work! I read the paper SegmentNT and found this great idea of using unet to reach single-nucleotide resoltion. I notice to train SegmentNT you curated a dataset of annotations at nucleotide-level precision for 14 types of genomic elements. May i ask Is it possible to get this segmentation dataset of genomics elements at nucleotide-level directly?

dallatt commented 5 months ago

Hello @JasonLinjc ,

Can you please send an email to the corresponding authors so that we can better assist you on this?

Best regards, Hugo