search

institut-de-genomique / BoardION

Other
11 stars 1 forks source link

How to run recursively to find multiple runs #11

Closed callumparr closed 3 years ago

callumparr commented 3 years ago

How do we get the docker container to find multiple runs? Do the sequencing summary files need to be first collated into one directory? Or is there a way to get it to search through subfolders?

sengelen commented 3 years ago

All the sequencing summary files should be directly (not in subfolder) in the input directory of the docker. Here we name the seq_sum files with the flowcell codes. If you want to see your runs as ended you have to also add the final_summary.txt files generated by the sequencer at the end of the runs.

callumparr commented 3 years ago

Would symlinks be OK?