institut-de-genomique / BoardION

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boardion_preprocess not in the docker image #2

Open gerald2545 opened 4 years ago

gerald2545 commented 4 years ago

trying to run BoardIon as explained in readme

the web interface is accessible, but not data can be displayed.
no apparent error in docker logs

connecting to the container, it seems boardion_preprocess is not present in /usr/local/src/

sh-4.2# ls -l
total 48
-rw-rw-r-- 1 root root 21783 May 18 12:09 LICENSE
drwxrwxr-x 4 root root  4096 May 20 17:06 app
-rw-r--r-- 1 root root   145 Jun 17 09:55 boardion-crontab
drwxrwxrwx 1 root root     0 Jun 17 09:42 data
drwxrwxr-x 2 root root  4096 May 18 12:09 demo
-rwxrwxr-x 1 root root  1715 May 18 12:09 docker_entrypoint.sh
-rw-rw-r-- 1 root root   524 May 18 12:09 dockerfile
drwxr-xr-x 1 root root  4096 Jun 17 09:55 logs
drwxrwxrwx 1 root root     0 Jun 17 08:31 stat
sh-4.2# cd logs/
sh-4.2# cat preprocess.log

/usr/local/src/docker_entrypoint.sh: line 42: /usr/local/src/boardion_preprocess: No such file or directory

I'm using docker 2.3.0.3 on windows.

Actal commented 4 years ago

I have upload a new image on docker hub with the preprocessing program, could you try it?

gerald2545 commented 4 years ago

OK, thanks,
before pulling the new image, I prefer to wait for information on issue #5, (in case it needs some correction...and a new image)
I'm at home with a very low bandwith...I prefer to besure the next download will be the right one ;)

gerald2545 commented 4 years ago

same error with the last version. I did :

boardion_preprocessis still not present in /usr/local/src

Actal commented 4 years ago

It should be fixed now