What "[Error] Long reads data should be alone." mean?

institut-de-genomique / Gmove

Gmove is a gene prediction tool

http://www.genoscope.cns.fr/gmove

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What "[Error] Long reads data should be alone." mean? #4

Closed xiekunwhy closed 1 year ago

xiekunwhy commented 2 years ago

Hi,

I use the following command but got massage "[Error] Long reads data should be alone.", why and how to use longRead data?

gmove -o MChr_1 -f hap1.msksoft.fa --rna MChr_1.psiclass.gff --longReads MChr_1.cdhit.gff --abinitio MChr_1.augustus.gff

Best, Kun

auryjm commented 2 years ago

Thank you for your message.

The longReads option is still experimental and is dedicated to predict alternative transcripts based only on longReads, so you can use other inputs when using this option.

But if you want to use long-read alignments with other data types, you can give the corresponding file with the --rna option.

Best, Jean-Marc