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institut-de-genomique / MaGuS

MaGuS (Map-Guided Scaffolding) is a map-guided scaffolder and a reference-free assembly quality evaluator.
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MaGuS using in silico data from a closely related organism instead of BAC data #1

Open DHatziioanou opened 8 years ago

DHatziioanou commented 8 years ago

Hello,

I have a closely related reference sequence (with gaps) for some genomic data for which I am having trouble assembling and scaffolding, at first by only looking at this repository I though the wgpFile was the BAC assembled contig file and that I could therefore use my reference file (masked for repetitive sequences and split into contigs) to run MaGuS and then correct for rearrangements later but of course this didn't work.

Could you recommend any other method for making a wgpFile in silico using a reference sequence?

Thanks, Diane

HmuSong commented 7 years ago

Hello, have you solved this problem?