Closed HmuSong closed 6 years ago
Hello, getseq is not a sub function, it's a stand-alone program which is provided in bin/ directory. Have you added MaGuS binaries in $PATH ?
Hello, I have checked my $PATH, the problem just like you said. The issue have been solved and MaGus works well now. Thanks a lot for your help. I got the results of pairs2links now, but I can't understand the meaning of each column of the "***.de" file.
Hello, The format of .de file belongs to SGA program that you can find in the following link: https://github.com/jts/sga Fortunatly, you can learn more about .de format by reading this google group: https://groups.google.com/forum/#!topic/sga-users/7a01mz_ObTE
Thank you very much for your guide.
Hello, when I used the Magus pairs2links function to estimate the gaps size between two scaffold, I have encounted this problem that Can't exec "getseq": at PATH/Magus/Magus.pm line 64 [ERROR] :: fill :: Cannot use getseq : . I have searched the entire file but could not find the sub function "getseq". Could you tell me the reason why this error occured? Thank very much!