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int-brain-lab / ibl-sorter

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Updated ibl sorter #16

Open florgf88 opened 1 month ago

florgf88 commented 1 month ago

Hello! I found some time ago that there was a new release of the Ibl sorter with a better drift motion correction and improvements in the spike holes issue. I was wondering if this version is available to use. I tried to set the ibl_prod_dev version in a fresh conda environment and I found some issues related to the dartSort and torch. Many thanks!

chris-langfield commented 1 month ago

We are about to release the new version on the main branch. New installation instructions are now on the README page. We recommend using a Python virtualenv as we found this deals with having cupy installed alongside Torch better. Feel free to post the specific issue you are having!

florgf88 commented 2 weeks ago

Hi, many thanks for the response. I managed to install version 1.7.3, which is working very well. I want to apply this pipeline to old recordings that are pretty noisy. Then, all detected channels are either dead or noisy, raising an error when computing the covariance matrix. I was thinking of computing some preprocessing steps outside the pipeline. Is there any way to skip specific preprocessing steps to avoid duplication (e.g. temporal channel alignment)? Many thanks!