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int-brain-lab / iblapps

pyqt5 dependent applications for IBL sessions
MIT License
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using extract_data on Open Ephys files #47

Open Lozanoda opened 3 years ago

Lozanoda commented 3 years ago

I am using the Open Ephys binary files instead of the spike GLX ephys files and the extract_data function doesnt seem to recognize them. Is there way to convert these to the spike glx format or alter the function so it can read the open ephy outputs for the spike and lfp data? Thank you!

MCangelov commented 2 years ago

I've run into the same issue and would love to know if there's a workaround.

jonahpearl commented 5 months ago

Following up to see if an open ephys extractor was ever built? It looks like the extract files functionality more or less replicates an export to phy, and then adds on the RMS information in IBL format, so I'd bet that this could be done fairly painlessly with a wrapper in spike interface. I'm happy to work on it if no one else has done it.

mayofaulkner commented 5 months ago

Hello! Indeed, we still haven't got around to writing an extractor for open ephys data. If you would be happy to work on that, that would be great! Once you are done if you could make a PR and then I can review. Thank you for your help!