int-brain-lab / iblenv

Unified environment and Issue tracker for all IBL
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[Documentation] Better documentation on querying spike data #346

Closed k1o0 closed 2 months ago

k1o0 commented 1 year ago

Jaweria asked how to query for 'good' ephys sessions. Collecting the various notebook tutorials in iblenv would help, also adding a section about Alyx queries that include spike QC?

k1o0 commented 1 year ago

@GaelleChapuis what are your thoughts? Perhaps there is already documentation about this?

GaelleChapuis commented 1 year ago

I do not think we have good documentation on this. There are 2 ways:

1) use the bwm paper query

2) use a Django filter to remove insertions for with their qc / the session qc is CRITICAL. If the aim is only to find insertions with good raw ephys data, this would be sufficient. We do not have QC at the level of spike sorting.