Check PID with trajectory issues

int-brain-lab / paper-ephys-atlas

Code related to the electrophysiology atlas paper

MIT License

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Check PID with trajectory issues #16

Closed oliche closed 3 weeks ago

oliche commented 5 months ago

Launching this code: ibldevtools/Gaelle/gc-ephys-atlas/scratch_169__plot_all_insertions.py

These PIDs are problematic: ERROR - fdeff6df-7216-4b83-ab64-241e9fd173da ERROR - 8f2e16c4-893b-4f8f-bfb2-94fa452710ec ERROR - 2b5ebb3e-273c-400d-bf35-33e87cbe46fb ERROR - 9861fa24-d998-4ef5-9606-89002b8706fc ERROR - b72b22c2-6e9d-4604-9910-20c0e1a467d7

GaelleChapuis commented 3 weeks ago

fdeff6df-7216-4b83-ab64-241e9fd173da xzy_channels_table = ba.xyz2ccf(xzy_channels_table) ValueError: At least one z value lies outside of the atlas volume.

Use script ibldevtools/Gaelle/gc-ephys-atlas/scratch_164__plot_tilted_slice_traj.py to plot slices

GaelleChapuis commented 3 weeks ago

2b5ebb3e-273c-400d-bf35-33e87cbe46fb

No plot

ephysalign = EphysAlignment(xyz_picks, depths) ValueError: At least one z value lies outside of the atlas volume.

GaelleChapuis commented 3 weeks ago