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Hello,
Thank you for your comment. The login script was updated so that it is not creating any files like nodes.txt or checknode.txt. I think that will fix that issue.
You have to change the script to eliminate all relative references to nodes.txt file and use smth like NODE_FILE_TXT=$HOME/nodes.txt
Also you have to add -d . at the end of qsub command to stay in same folder after invoking qsub