bug in Group Violin - Githubissues

interactivereport / cellxgene_VIP

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

https://cellxgenevip-ms.bxgenomics.com

MIT License

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bug in Group Violin #39

Closed longfeili5170 closed 3 years ago

longfeili5170 commented 3 years ago

When I use Group Violin function, the font cannot be displayed normally.

z5ouyang commented 3 years ago

It is working on the host site. It was generated by R code, so a few R packages are needed, make sure you have them: gridExtra_2.3; ggpubr_0.3.0; glue_1.4.2; RColorBrewer_1.1-2; dplyr_1.0.4; ggplot2_3.3.3

longfeili5170 commented 3 years ago

I have installed the corresponding version of the package, but still cannot get the correct font.

z5ouyang commented 3 years ago

Could you please try the DEG function, will the font show in the static volcano at the bottom? I think this might be related to your system setting. You can provide me a test subset dataset with all values in X are random values.

longfeili5170 commented 3 years ago

I can't implement DEG function either. The error is as follows: No font found in Rcairo_set_font. So I solved these two problems through ‘yum install xorg-x11-fonts-Type1’.

Thanks!!!