Open ankur-26197 opened 2 years ago
I found the solution for ComplexHeatmap. There were few dependencies missing.
I found the solution for ComplexHeatmap. There were few dependencies missing.
what dependencies were missing? I am getting the same error
Hello, I am using cellxgene VIP for plotting heatmap for gene expressions for different annotations loaded. I get the following error while selecting
Complex heatmap
ERROR @server: Traceback (most recent call last): subprocess.CalledProcessError: Command '/opt/conda/envs/VIP/lib/python3.8/site-packages/server/app/complexHeatmap.R /tmp/HEAT1653565712.456287.csv IL3RA,FCGR2B,FCGR3B Expression False 6 8 Reds png 11 150 fontsize=4,col=\'black\',fontface=\'plain\' fontsize=4 fontsize=6 T Yes returned non-zero exit status 1.
However with seaborn it works perfectly fine and I could generate the heatmap.
Also when I set
Gene as
radio button toRow
, it still plots them across column. Refer the image below for this issue.I have deployed the application using
docker
.Can you please help me out?