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Data sources for HumanMine
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NCBI GFF creating pseudogenes #3

Open julie-sullivan opened 5 years ago

julie-sullivan commented 5 years ago

@rachellyne Look at this gene:

https://beta.humanmine.org/beta/pseudogene:gene0

This isn't a bug, this feature is being created correctly (given the config we have). The feature comes from the NCBI GFF, and is a pseudogene.

But we load DDX11L1 from several other sources as a regular gene.

Is the NCBI wrong? What should we do?

julie-sullivan commented 5 years ago 
<query name="" model="genomic" view="Pseudogene.primaryIdentifier" longDescription="" sortOrder="Pseudogene.primaryIdentifier asc">
  <constraint path="Pseudogene.primaryIdentifier" op="=" value="gene*"/>
</query>

16000+ genes. All of the ones from the GFF file?