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load modification data #12

Open ValWood opened 2 years ago

ValWood commented 2 years ago

We use Protein Modification ontology PSIMOD (the one with MOD: prefixes) to describe actual modifications (we use PRO to describe modified forms as annotation entities, (but we probably won't get to include those)

https://bioportal.bioontology.org/ontologies/PSIMOD?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMOD_00696

Our date is here:

https://www.pombase.org/data/annotations/modifications/

our flatfile format is fairly straightforward: https://www.pombase.org/documentation/modification-data-bulk-upload-format

ValWood commented 2 years ago

|I don't think there will be time to do this as the extensions (residues etc) would need to be modelled correctly.