Closed ValWood closed 2 years ago
Phenotype data should be
term termID term (phenotype) description gene allele penetrance Expressivity
Penetrance will be one of 3 qualifiers (high/medium or low) Or a numberral which is always reported as a %
Note: penetrance numbers look odd. I'm not aware of any under around 5% I need to check the ones above if you can let me know the source.
I think it's better to create a template for this @rachellyne
Here are the data
@rachellyne we can have a look at this next week.
@val yes let's look togther. It all looks correct according to the data we have in the file - there are a few with lower penetrance.
Right I will check the V. low penetrance data at our end. That smells funny, it's probably annotation errors.
OK the data is OK. I fixed a couple of things.
One small change. Is it possible to label the "phenotype" class as "phenotype (%)" Or we should display each number as 0.1% 1% etc. I think it is better to keep just numerical values and change the headings in case it is possible to do queries based on numerical ranges?)
@ValWood could you confirm that you mean to rename "phenotype" class into "phenotype (%)" and not "penetrance" attribute into "penetrance (%)"
Oops sorry that should be penetrance (%)!
Fixed
Currently displays as