Open aliangboom opened 4 years ago
matlabbe
commented
4 years ago Remove anaconda paths in your LD_LIBRARY_PATH or PATH before making rtabmap. The wrong libraries are taken from your anaconda installation instead of the system ones, which may have incompatibilities. Remove rtabmap/build directory before retrying to clear cmake cache.
aliangboom
commented
4 years ago Remove anaconda paths in your
LD_LIBRARY_PATHorPATHbefore making rtabmap. The wrong libraries are taken from your anaconda installation instead of the system ones, which may have incompatibilities. Removertabmap/builddirectory before retrying to clear cmake cache.
Thanks, it works!
eric-schleicher
commented
3 years ago I'm having this same issue but with a different twist. I have a workspace with another package that seems to be causing this issue. if i stick rtabmap_ros in it's own workspace, no issues...
However with this other ros package in a common workspace. When I check the LD_LIBRARY_PATH I can see that the that the lib folder from the workspaces /devel/lib is in the LD_LIBRARY_PATH. But when running catkin_make
This is causing an identical error as above for rtabmap_ros.
any idea?
I want to install the RTAB-Map in ubuntu 16.04 and download RTAB-Map source. When $ cmake .. ,it say: (base) jiliangli@jiliang-ThinkStation-P520:~/rtabmap/build$ cmake .. -- The imported target "vtkRenderingPythonTkWidgets" references the file "/usr/lib/x86_64-linux-gnu/libvtkRenderingPythonTkWidgets.so" but this file does not exist. Possible reasons include:
-- The imported target "vtk" references the file "/usr/bin/vtk" but this file does not exist. Possible reasons include:
-- PCL definitions don't contain "-march=native", make sure all libraries using Eigen are also compiled without that flag to avoid some segmentation faults (with gdb referring to some Eigen functions). -- Found Sqlite3: /home/jiliangli/anaconda3/include /home/jiliangli/anaconda3/lib/libsqlite3.so -- Found OpenMP -- Found OpenCV: /usr/local/include/opencv4 -- Found PCL: /usr/include/pcl-1.7;/usr/include/eigen3;/usr/include;/usr/include/ni;/usr/include/openni2;/usr/include/vtk-6.2;/usr/include/x86_64-linux-gnu;/usr/include/jsoncpp;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/include/freetype2;/usr/include/x86_64-linux-gnu/freetype2;/usr/include/python2.7;/usr/include/hdf5/serial;/usr/include/libxml2;/usr/include/tcl -- Found ZLIB: /home/jiliangli/anaconda3/include -- VTK_RENDERING_BACKEND=OpenGL -- Found OpenNI2: /usr/include/openni2 -- Found DC1394: /usr/include/dc1394 CMake Warning at cmake_modules/FindG2O.cmake:122 (MESSAGE): Latest g2o version detected with c++11 interface (config file: /usr/local/include/g2o/config.h). Make sure g2o is built with "-DBUILD_WITH_MARCH_NATIVE=OFF" to avoid segmentation faults caused by Eigen. Call Stack (most recent call first): CMakeLists.txt:374 (FIND_PACKAGE)
-- Found g2o: /usr/local/include;/usr/include/suitesparse;/usr/include/suitesparse -- GTSAM include directory: /usr/local/lib/cmake/GTSAM/../../../include;/usr/include/eigen3 -- FlyCapture2_INCLUDE_DIR=FlyCapture2_INCLUDE_DIR-NOTFOUND -- FlyCapture2_LIBRARY=FlyCapture2_LIBRARY-NOTFOUND -- Triclops_INCLUDE_DIR=Triclops_INCLUDE_DIR-NOTFOUND -- Triclops_LIBRARY=Triclops_LIBRARY-NOTFOUND -- FlyCaptureBridge_LIBRARY=FlyCaptureBridge_LIBRARY-NOTFOUND -- Found octomap 1.9.0: /usr/local/include -- Found installed version of Eigen: /usr/lib/cmake/eigen3 -- Found required Ceres dependency: Eigen version 3.2.92 in /usr/include/eigen3 -- Found required Ceres dependency: glog -- Found required Ceres dependency: gflags -- Found Ceres version: 2.0.0 installed in: /usr/local with components: [EigenSparse, SparseLinearAlgebraLibrary, LAPACK, SuiteSparse, CXSparse, SchurSpecializations] -- Architecture: x86_64 -- Found Pthreads -- yaml-cpp not found, euroc_dataset tool won't be built...
-- Info : -- Version : 0.19.6 -- CMAKE_INSTALL_PREFIX = /usr/local -- CMAKE_BUILD_TYPE = Release -- CMAKE_INSTALL_LIBDIR = lib -- BUILD_APP = ON -- BUILD_TOOLS = ON -- BUILD_EXAMPLES = ON -- BUILD_SHARED_LIBS = ON -- CMAKE_CXX_FLAGS = -fmessage-length=0 -fopenmp -std=c++11 -- FLANN_KDTREE_MEM_OPT = OFF -- PCL_DEFINITIONS = -DEIGEN_USE_NEW_STDVECTOR;-DEIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET;-DFLANN_STATIC;-Dqh_QHpointer -- PCL_VERSION = 1.7.2 -- -- Optional dependencies ('' affects some default parameters) : -- With OpenCV 4 xfeatures2d module (SIFT/SURF/BRIEF/FREAK) = NO (not found, License: BSD) -- With Qt5 = YES (License: Open Source or Commercial) -- With VTK 6.2 = YES (License: BSD) -- With external SQLite3 = YES (License: Public Domain) -- With ORB OcTree = YES (License: GPLv3) -- With Madgwick = YES (License: GPL) -- With FastCV = NO (FastCV not found) -- -- Solvers: -- With TORO = YES (License: Creative Commons [Attribution-NonCommercial-ShareAlike]) -- With g2o = YES (License: BSD) -- With GTSAM = YES (License: BSD) -- With Ceres = YES (License: BSD) -- With VERTIGO = YES (License: GPLv3) -- With cvsba = NO (cvsba not found) -- With libpointmatcher = NO (libpointmatcher not found) -- -- Reconstruction Approaches: -- With OCTOMAP = YES (License: BSD) -- With CPUTSDF = NO (CPUTSDF not found) -- With OpenChisel = NO (open_chisel not found) -- With AliceVision = NO (AliceVision not found) -- -- Camera Drivers: -- With Freenect = NO (libfreenect not found) -- With OpenNI2 = YES (License: Apache v2) -- With Freenect2 = NO (libfreenect2 not found) -- With Kinect for Windows 2 = NO (Kinect for Windows 2 SDK not found) -- With Kinect for Azure = NO (Kinect for Azure SDK not found) -- With dc1394 = YES (License: LGPL) -- With FlyCapture2/Triclops = NO (Point Grey SDK not found) -- With ZED = NO (ZED sdk not found) -- With RealSense = NO (librealsense not found) -- With RealSense2 = NO (librealsense2 not found) -- -- Odometry Approaches: -- With loam_velodyne = NO (loam_velodyne not found) -- With libfovis = NO (libfovis not found) -- With libviso2 = NO (libviso2 not found) -- With dvo_core = NO (dvo_core not found) -- With okvis = NO (okvis not found) -- With msckf_vio = NO (WITH_MSCKF_VIO=OFF) -- With VINS-Fusion = NO (VINS-Fusion not found) -- With ORB_SLAM2 = NO (WITH_G2O should be OFF as ORB_SLAM2 uses its own g2o version)
-- Configuring done CMake Warning at corelib/src/CMakeLists.txt:599 (ADD_LIBRARY): Cannot generate a safe runtime search path for target rtabmap_core because files in some directories may conflict with libraries in implicit directories:
Some of these libraries may not be found correctly.
CMake Warning at guilib/src/CMakeLists.txt:197 (ADD_LIBRARY): Cannot generate a safe runtime search path for target rtabmap_gui because files in some directories may conflict with libraries in implicit directories:
Some of these libraries may not be found correctly.
CMake Warning at app/src/CMakeLists.txt:73 (ADD_EXECUTABLE): Cannot generate a safe runtime search path for target rtabmap because files in some directories may conflict with libraries in implicit directories:
Some of these libraries may not be found correctly.
CMake Warning at tools/ConsoleApp/CMakeLists.txt:27 (ADD_EXECUTABLE): Cannot generate a safe runtime search path for target consoleApp because files in some directories may conflict with libraries in implicit directories:
Some of these libraries may not be found correctly.
And when I put in $ make -j4, the error happened: [ 82%] Built target rtabmap_utilite [ 82%] Built target res_tool [ 82%] Built target imagesJoiner [ 82%] Built target extractObject [ 82%] Built target rtabmap_core [ 82%] Linking CXX executable ../../../bin/rtabmap-stereoEval [ 82%] Built target consoleApp [ 82%] Linking CXX executable ../../../bin/rtabmap-camera Scanning dependencies of target kitti_dataset [ 82%] Building CXX object tools/KittiDataset/CMakeFiles/kitti_dataset.dir/main.cpp.o [ 82%] Built target rtabmap_gui Scanning dependencies of target rgbd_dataset [ 82%] Building CXX object tools/RgbdDataset/CMakeFiles/rgbd_dataset.dir/main.cpp.o /home/jiliangli/anaconda3/lib/libpng16.so.16：‘inflateValidate@ZLIB_1.2.9’ /home/jiliangli/anaconda3/lib/libfontconfig.so.1：‘FT_Done_MM_Var’ /home/jiliangli/anaconda3/lib/libharfbuzz.so.0：‘FT_Get_Var_Blend_Coordinates’ collect2: error: ld returned 1 exit status tools/StereoEval/CMakeFiles/stereoEval.dir/build.make:450: recipe for target '../bin/rtabmap-stereoEval' failed make[2]: [../bin/rtabmap-stereoEval] Error 1 CMakeFiles/Makefile2:766: recipe for target 'tools/StereoEval/CMakeFiles/stereoEval.dir/all' failed make[1]: [tools/StereoEval/CMakeFiles/stereoEval.dir/all] Error 2 make[1]: /home/jiliangli/anaconda3/lib/libpng16.so.16：‘inflateValidate@ZLIB_1.2.9’onda3/lib/libfontconfig.so.1： /home/jiliangli/anaconda3/lib/libharfbuzz.so.0：‘FT_Get_Var_Blend_Coordinates’ collect2: error: ld returned 1 exit status tools/Camera/CMakeFiles/camera.dir/build.make:450: recipe for target '../bin/rtabmap-camera' failed make[2]: [../bin/rtabmap-camera] Error 1 CMakeFiles/Makefile2:710: recipe for target 'tools/Camera/CMakeFiles/camera.dir/all' failed make[1]: [tools/Camera/CMakeFiles/camera.dir/all] Error 2 [ 82%] Linking CXX executable ../../../bin/rtabmap-kitti_dataset [ 82%] Built target kitti_dataset [ 82%] Linking CXX executable ../../../bin/rtabmap-rgbd_dataset [ 82%] Built target rgbd_dataset Makefile:149: recipe for target 'all' failed make: [all] Error 2
Please give me some help, thanks.