TarReader.read: Record not found in XML entry.
TarReader.read: Record not found in XML entry.
OrcidTransformer: Name not found in ORCiD entry.
TarReader.read: Record not found in XML entry.
TarReader.read: Record not found in XML entry.
TarReader.read: Record not found in XML entry.
TarReader.read: Record not found in XML entry.
end result:
Vocabulary names converted. Total items 12638934.
12306834 items succeeded
332100 contained errors
0 were filtered.
we get for the import command
Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/invenio_vocabularies/contrib/names/datastreams.py", line 104, in write
current = self._resolve(vocab_id)
File "/usr/local/lib/python3.9/site-packages/invenio_vocabularies/contrib/names/datastreams.py", line 95, in _resolve
return self._service.resolve(self._identity, id_=id_, id_type=self._scheme_id)
File "/usr/local/lib/python3.9/site-packages/invenio_vocabularies/contrib/names/services.py", line 45, in resolve
raise PIDDoesNotExistError(pid_type=id_type, pid_value=id_)
invenio_pidstore.errors.PIDDoesNotExistError
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/bin/invenio", line 8, in <module>
sys.exit(cli())
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1130, in __call__
return self.main(*args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1657, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1657, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/click/decorators.py", line 26, in new_func
return f(get_current_context(), *args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/flask/cli.py", line 357, in decorator
return __ctx.invoke(f, *args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/invenio_vocabularies/cli.py", line 127, in import_vocab
success, errored, filtered = _process_vocab(config, num_samples)
File "/usr/local/lib/python3.9/site-packages/invenio_vocabularies/cli.py", line 81, in _process_vocab
for result in ds.process():
File "/usr/local/lib/python3.9/site-packages/invenio_vocabularies/datastreams/datastreams.py", line 61, in process
yield self.write(transformed_entry)
File "/usr/local/lib/python3.9/site-packages/invenio_vocabularies/datastreams/datastreams.py", line 104, in write
writer.write(stream_entry)
File "/usr/local/lib/python3.9/site-packages/invenio_vocabularies/contrib/names/datastreams.py", line 112, in write
return StreamEntry(self._service.create(self._identity, entry))
File "/usr/local/lib/python3.9/site-packages/invenio_records_resources/services/uow.py", line 324, in inner
res = f(self, *args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/invenio_records_resources/services/records/service.py", line 293, in create
return self._create(self.record_cls, identity, data, uow=uow, expand=expand)
File "/usr/local/lib/python3.9/site-packages/invenio_records_resources/services/uow.py", line 328, in inner
return f(self, *args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/invenio_records_resources/services/records/service.py", line 308, in _create
data, errors = self.schema.load(
File "/usr/local/lib/python3.9/site-packages/invenio_records_resources/services/records/schema.py", line 83, in load
valid_data = self.schema(context=context, **schema_args).load(data)
File "/usr/local/lib/python3.9/site-packages/marshmallow/schema.py", line 722, in load
return self._do_load(
File "/usr/local/lib/python3.9/site-packages/marshmallow/schema.py", line 909, in _do_load
raise exc
marshmallow.exceptions.ValidationError: {'family_name': ['Field may not be null.']}
Package version (if known): invenio-app-rdm: v9.1.3
Describe the bug
When following the instructions here: https://inveniordm.docs.cern.ch/customize/vocabularies/names/#creating-a-namesyaml-file
we get for the
convert
command many lines with:end result:
we get for the
import
commandExpected behavior
for the
convert
command, in discord we got the information, that theerrors
might should got filtered out (due to missingfamily_name
s; see https://discord.com/channels/692989811736182844/1013713642857967626/1014184903044239382)for the
import
I would expect that it is not crashing and generating the expected names-vocabulary.Additional context
family_name
null
values when taking a look at the created/convertednames.yaml
family_name
have to filtered out and cannot be included in thenames.yaml
: https://www.kalzumeus.com/2010/06/17/falsehoods-programmers-believe-about-names/