Problem with MRIs loading, selecting fiducials and creating markers with invesalius3 on mac

[giupier95]

The loading of the resonance happens in a strange way, I attach screen. The software does not allow me to select fiducials and markers on the 3D surface. And if I select them on the sections sometimes the point doesn't match the right position. Also I cannot run it with python or python3 I have to run it necessarily with pythonw, why?

[tfmoraes]

Hi @giupier95. It shows some errors in the terminal? If so, can you paste it here?

About your other question: it's not necessary, I run using python. How did you create your python environment? I recommend you to use the python from homebrew or use something pyenv or asdf.

[giupier95]

Hi @tfmoraes. In the first picture is terminal screen when I load the .nii file. And then I don't see any other errors. As far as running with python, I can't do that. I attach a screenshot. I created my environment following these instructions https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Mac

[tfmoraes]

Please, try to apply this patch:

curl -LO https://gist.githubusercontent.com/tfmoraes/a2fa76426420044df6b4f01afd986d72/raw/21793e1669fab900ec4bfcf7a2aa42be4a04bfa2/test_mac.patch
git apply test_mac.patch

[giupier95]

Hi @tfmoraes, sorry to be late. I applied this patch, attached you can find my terminal screen.

[tfmoraes]

@giupier95 the patch wasn't applied because you are not at master, or your master is not updated with upstream. Try to clone from upstream:

git clone https://github.com/invesalius/invesalius3.git invesalius3_upstream
cd invesalius3_upstream
python app.py

If the problems you are having are not happening here, so You have to update your master with upstream master. If the problems are happening yet, apply the patch I send before:

curl -LO https://gist.githubusercontent.com/tfmoraes/a2fa76426420044df6b4f01afd986d72/raw/21793e1669fab900ec4bfcf7a2aa42be4a04bfa2/test_mac.patch
git apply test_mac.patch

[giupier95]

Hi @tfmoraes, sorry for the late. It seems to work. Thank you so much.

[vhosouza]

@tfmoraes , it seems this bug has been fixed, right? Has the patch been applied to the master and the issue can be closed?

[tfmoraes]

@vhosouza closed!