Multi input support

[AlistairNWard]

This is based on the use case used in NeoSeq, but make sure that any development is not specific to this project. We will likely want to break this issue up into smaller, manageable components. Feel free to comment on this and we can break out into specifics.

When genepanel is launched, it should be able to accept one or multiple of the following inputs:

1. A clinical note
2. A list of phenotype terms
3. A list of HPO terms (or ids)
4. A predefined gene list

Requirements

• [ ] Allow multiple inputs
• [ ] If a clinical note is provided, HPO ids within it should be identified and extracted
• [ ] Supplied HPO terms should be preselected in the HPO section of the UI
• [ ] If only HPO terms are provided, only those HPO terms should be returned in the HPO section (e.g. these terms shouldn't be used to generate a list of HPO terms - if 4 terms are supplied, 4 should appear in the list to review)
• [ ] If a predefined list of genes is supplied, these should be included in the created gene list as added genes
• [ ] UI/UX. Ensure that this the flow of the app is intuitive, with minimal manual input required for all combinations of possible inputs

[adityaekawade]

I feel the input should accept: clinical notes, phenotypes terms, and HPO (terms) ids. A predefined gene list can be added through the "Add gene list" button in the table..

[AlistairNWard]

But if the gene list is stored as a gene set in Mosaic, it would be pretty onerous for a user to try and get the list into genepanel when they could just define it as an input, which they can already do.

[adityaekawade]

Oh! So you mean, when genepanel is launched from a project in Mosaic, it should be able to get the gene set from the URL, the same way clin.iobio does and add those genes to the genes table. Yeah, that works.

I was assuming, the input box should accept the gene list when launched in standalone mode. (We can allow entering a gene list as input even in standalone mode, but I think it would be better to add it from the button in the table)

[AlistairNWard]

Oh sorry, I wasn't clear - but yes, what you said. Genepanel should conceptually allow all these inputs, but all inputs should not be handled in the same way. So, yes, you can't add a gene list to the input box - that is for HPO, phenotypes etc. If launched from Mosaic with a gene set defined, the genes in that set would appear as genes that had been manually added.