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iobio / vcf.iobio.io

MIT License
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Stats for subset of samples #11

Closed AlistairNWard closed 7 years ago

AlistairNWard commented 8 years ago

If the vcf file provided has many samples, can we provide statistics for a user-defined subset of samples? The value of this comes from variant calling with backgrounds. If calls are generated for a trio, but the calling includes 200 background samples, the statistics shown are dominated by the background samples, so not much can be gleaned about the trio samples.

AlistairNWard commented 8 years ago

I want to highlight this as an important update. We need to discuss how we want to implement. Also, can I be added as a member of this so I can add Labels etc.?

AlistairNWard commented 8 years ago

Maybe we generate a new app that can be launched into a new tab from vcf.iobio. This app would be a vcf filter app and would allow things like choosing the samples you want to view, info fields to visualize etc. The resulting app would generate a filtered vcf stream directed back to the original vcf.iobio window.

AlistairNWard commented 7 years ago

This has been added, but isn't working.